New Saccharomyces Sequences 03/30/99

SGD Sequences yeast-seq at genome.stanford.edu
Wed Mar 31 13:38:10 EST 1999


====================== New DNA Sequences =======================

SCYGL263W   Z72785 Y13135     5311bp    DNA      PLN      12-MAR-1999
    S.cerevisiae chromosome VII reading frame ORF YGL263w.
    COS12.

=========== Updated Sequence Features/Annotations  =============

AB003521    AB003521     2903bp    DNA      PLN      22-JAN-1999
    Saccharomyces cerevisiae gene for flocculin, partial cds.
    flocculin; Lg-FLO1.

AB013497    AB013497     2861bp    DNA      PLN      09-JAN-1999
    Saccharomyces cerevisiae RER2 gene for cis-prenyltransferase, complete
     cds.
    cis-prenyltransferase; RER2.

AB013498    AB013498     3032bp    DNA      PLN      09-JAN-1999
    Saccharomyces cerevisiae SRT1 gene for cis-prenyltransferase homologue,
     complete cds.
    cis-prenyltransferase homologue; SRT1.

AB015285    AB015285      657bp    DNA      PLN      06-FEB-1999
    Saccharomyces cerevisiae gene for Mog1, complete cds.
    Mog1; MOG1.

AB016599    AB016599     3104bp    mRNA     PLN      06-FEB-1999
    Saccharomyces cerevisiae mRNA for Y'-helicase protein 1, complete cds.
    Y'-Help1; Y'-helicase protein 1.

AB017166    AB017166      915bp    DNA      PLN      20-FEB-1999
    Saccharomyces cerevisiae GPI12 gene, complete cds.
    GPI12.

AB017626    AB017626      480bp    DNA      PLN      08-JAN-1999
    Saccharomyces cerevisiae ScGNA1 gene for acetyltransferase, complete cds.
    acetyltransferase; ScGNA1.

AB018078    AB018078     4611bp    DNA      PLN      10-DEC-1998
    Saccharomyces cerevisiae gene for oligo-1,4 -1,4-glucantransferase /
     amylo-1,6-glucosidase, complete cds.
    oligo-1,4 - 1,4-glucantransferase / amylo-1,6-glucosidase.

AF004913    AF004913     2106bp    DNA      PLN      23-MAR-1999
    Saccharomyces cerevisiae translation initiation factor 3 p33 subunit
     (TIF35) gene, complete cds.
    TIF35; translation initiation factor 3 p33 subunit.

AF005702    AF005702      568bp    DNA      PLN      15-JAN-1999
    Saccharomyces cerevisiae 25S ribosomal RNA gene, partial sequence.
    25S rRNA.

AF013167    AF013167     1708bp    DNA      PLN      02-JAN-1999
    Saccharomyces cerevisiae MSS1 gene, complete cds.
    MSS1.

AF016262    AF016262     1479bp    mRNA     PLN      04-MAR-1999
    Saccharomyces cerevisiae overproduction induced pheromone resistant yeast
     1 (OPY1) mRNA, complete cds.
    OPY1; overproduction induced pheromone resistant yeast 1.

AF016263    AF016263     1083bp    mRNA     PLN      04-MAR-1999
    Saccharomyces cerevisiae overproduction induced pheromone resistant yeast
     2 (OPY2) mRNA, complete cds.
    OPY2; overproduction induced pheromone resistant yeast 2.

AF017142    AF017142     1167bp    DNA      PLN      08-FEB-1999
    Saccharomyces cerevisiae ADP-ribosylation factor-like protein 1 (ARP1)
     gene, complete cds.
    ARP1; ADP-ribosylation factor-like protein 1.

AF039063    AF039063 M63893     2514bp    mRNA     PLN      01-JAN-1999
    Saccharomyces cerevisiae RNA-dependent RNA polymerase mRNA, complete cds.
    RNA-dependent RNA polymerase.

AF059310    AF059310      372bp    mRNA     PLN      22-JAN-1999
    Saccharomyces cerevisiae Sem1p (SEM1) mRNA, complete cds.
    SEM1; Sem1p.

AF065136    AF065136      270bp    DNA      PLN      17-DEC-1998
    Saccharomyces cerevisiae deleted in split hand/split foot 1 protein
     homolog (DSH1) gene, complete cds.
    DSH1; deleted in split hand/split foot 1 protein homolog.

AF073791    AF073791      204bp    DNA      PLN      06-JAN-1999
    Saccharomyces cerevisiae ATP synthase subunit i (ATP18) gene, nuclear
     gene encoding mitochondrial protein, complete cds.
    ATP18; ATP synthase subunit i.

AF080089    AF080089      429bp    DNA      PLN      12-JAN-1999
    Saccharomyces cerevisiae cytidine deaminase Cdd1p (CDD1) gene, complete
     cds.
    CDD1; cytidine deaminase Cdd1p.

AF090442    AF090442      843bp    DNA      PLN      09-DEC-1998
    Saccharomyces cerevisiae d3,d2-enoyl CoA isomerase ECI1 gene, complete
     cds.
    d3,d2-enoyl CoA isomerase ECI1.

AF100952    AF100952      100bp    mRNA     PLN      28-FEB-1999
    Saccharomyces cerevisiae SUR4 gene, 3' flanking region.
    SUR4.

AF100953    AF100953      100bp    mRNA     PLN      28-FEB-1999
    Saccharomyces cerevisiae NIP29 gene, 3' flanking region.
    NIP29.

AF108188    AF108188      333bp    DNA      PLN      03-FEB-1999
    Saccharomyces cerevisiae RNA polymerase III C11 subunit (RPC11) gene,
     complete cds.
    RPC11; RNA polymerase III C11 subunit.

AF112860    AF112860      870bp    DNA      PLN      28-JAN-1999
    Saccharomyces cerevisiae aquaporin 2 (AQY2) gene, complete cds.
    AQY2; aquaporin 2.

AF117345    AF117345     1805bp    DNA      PLN      28-FEB-1999
    Saccharomyces cerevisiae checkpoint protein kinase homolog Chk1 (CHK1)
     gene, partial cds.
    CHK1; checkpoint protein kinase homolog Chk1.

D87841      D87841     7244bp    DNA      PLN      30-JAN-1999
    Saccharomyces cerevisiae IKI3 gene, complete cds.
    Iki3p; IKI3.

D89860      D89860      697bp    DNA      PLN      22-JAN-1999
    Saccharomyces cerevisiae gene for flocculin, partial cds.
    flocculin; Lg-FLO1.

MISC23      V00703      865bp    DNA      PLN      04-DEC-1998
    Yeast mitochondrial oxi3 gene fragment with part of the intron aI4.
     Contains an open reading frame for a putative enzyme involved in
     splicing the cytochrome b gene.
    cytochrome.

S43129      S43129      182bp    mRNA     PLN      09-FEB-1993
    RIM1=single-stranded DNA binding protein [Saccharomyces cerevisiae=yeast,
     mRNA Partial, 182 nt].
    RIM1.

S45861      S45861       89bp    DNA      PLN      05-JAN-1993
    actin {cryptic promoter, intron 1} [Saccharomyces cerevisiae=yeast,
     Genomic, 89 nt].
    actin.

S48033      S48033      328bp    mRNA     PLN      26-JAN-1993
    MFA2=a-mating factor [Saccharomyces cerevisiae, mRNA, 328 nt].
    MFA2.

S48552      S48552     4740bp    DNA      PLN      10-JUL-1992
    orf YCR021. . .orf YCR041 [Saccharomyces cerevisiae, Genomic, 3 genes,
     4740 nt].
    orf YCR021; CDC10; orf YCR041.

S58126      S58126    16956bp    DNA      PLN      19-JUN-1995
    LEU1-ATE1 loci: LEU1. . .YGL029 [Saccharomyces cerevisiae, Genomic, 14
     genes, 16956 nt].
    LEU1; YGL021; SCl1; YGL022; YGL025; PDR1; YGL023; YGL026; YGL024; PDR6;
     YGL027; YGL028; ATE1; YGL029.

S61041      S61041     1260bp    DNA      PLN      06-AUG-1993
    PHO81=PHO5 regulatory factor {promoter} [Saccharomyces cerevisiae,
     Genomic, 1260 nt].
    PHO81.

S65964      S65964     7529bp    DNA      PLN      29-NOV-1993
    ARC: TIF51A. . .UTR2 [Saccharomyces cerevisiae, Genomic, 7 genes, 7529
     nt].
    TIF51A; UTR5; ANP1; RAD23; UTR4; CYC7; UTR2.

S67408      S67408      612bp    DNA      PLN      09-MAR-1994
    MAG=3-methyladenine DNA glycosylase {promoter} [Saccharomyces cerevisiae,
     Genomic, 612 nt].
    MAG.

SC114       X68577 S47699    11437bp    DNA      PLN      06-FEB-1999
    S. cerevisiae 11.4kb segment of chromosome II.
    autonomously replicating; acetyl CoA hydrolase; ACH1 gene; ARS; PEP1;
     transmembrane protein; FUS3; protein kinase; ACH1; acetyl-CoA hydrolase;
     YBL03.20; YBL03.19.

SC3085      Z68111 U00094    10339bp    DNA      PLN      04-DEC-1998
    S.cerevisiae chromosome XVI PCR product 3085.
    eukaryotic iniation factor 5; GLN1; glutamine synthetase; TIF5; vacuolar
     H(+)-ATPase 54 kda subunit; VMA13; Gln1p; Vma13p; YP3085.03c; YP3085.04;
     Tif5p; YP3085.06c.

SCBPPS      X79743    33852bp    DNA      PLN      02-MAR-1999
    S.cerevisiae BET1, PAN1 PRI1 and STS1 genes.
    BET1 gene; PAN1 gene; PRI1 gene; sts1+ gene; tRNA-Glu gene; BET1; BET1
     protein; PAN1; PAN1 protein; tRNA-Glu; PRI1; PRI1 protein; STS1; STS1
     protein.

SCCHROIV    X82086    32821bp    DNA      PLN      21-JAN-1999
    S.cerevisiae DNA for right arm of chromosome IV.
    leucine; AFR1 gene; arginine tRNA; endoplasmic reticulum protein; D4405;
     8 putative transmembrane spans; D4406; 1 putative transmembrane span;
     D4416; D4411; trehalose-6-phosphate synthase /phosphatase; D4421;
     protein phosphatase 2A; D4426; D4431; D4436; 3 putative transmembrane
     spans; D4441; 1 putative transmembrane spans; D4446; D4451; D4456;
     D4461; 2 putative transmembrane spans; D4466; 4 putative transmembrane
     spans; D4471; D4472; D4473; D4475; protein of endoplasmic reticulum;
     D4478; D4483; splicing factor; D4490; arginine t-RNA; D4495; 1 leucine
     zipper pattern.

SCDFR1G     X16541     2601bp    DNA      PLN      01-MAR-1999
    Saccharomyces cerevisiae DNA for dihydrofolate reductase (EC 1.5.1.3).
    dihydrofolate reductase.

SCDSPISA    X71622    11719bp    DNA      PLN      01-MAR-1999
    Saccharomyces cerevisiae DNA sequence for Kazal serine protease inhibitor
     signature.
    Kazal serine protease inhibitor; transfer RNA.

SCE011856   AJ011856    85779bp    DNA      PLN      19-JAN-1999
    Saccharomyces cerevisiae complete mitochondrial genome.
    tP(TGG)Q - systematic name; tW(TCA)Q - systematic name; COX1; SCAI5alpha;
     I-SCEII; I-SCEIII; SCAI2; SCAI1; SCAI5beta; ATP8; ATP6; tE(TTC)Q -
     systematic name; SCBI2; CYTB; SCBI4; SCBI3; ATP9; tS(TGA)Q2 - systematic
     name; VAR1; SCEI; tT(TGT)Q1 - systematic name; tC(GCA)Q - systematic
     name; tH(GTG)Q - systematic name; tL(TAA)Q - systematic name; tQ(TTG)Q -
     systematic name; tK(TTT)Q - systematic name; tR(TCT)Q1 - systematic
     name; tG(TCC)Q - systematic name; tD(GTC)Q - systematic name; tS(GCT)Q1
     - systematic name; tR(ACG)Q2 - systematic name; tA(TGC)Q - systematic
     name; tI(GAT)Q - systematic name; tY(GTA)Q - systematic name; tN(GTT)Q -
     systematic name; tM(CAT)Q1 - systematic name; COX2; tF(GAA)Q -
     systematic name; tT(xxx)Q2 - systematic name; tV(TAC)Q - systematic
     name; COX3; tM(CAT)Q2 - systematic name.

SCMIF2A     Z18294     2161bp    DNA      PLN      04-DEC-1998
    Saccharomyces cerevisiae of MIF2 gene.
    MIF2 gene; Mif2 protein; MIF2.

SCPPH21     X58856     2249bp    DNA      PLN      21-JAN-1999
    S.cerevisiae PPH21 gene for protein phosphatase 2A.
    PPH21 gene; protein phosphatase 2A; PPH21.

SCPPH22     X58857     4177bp    DNA      PLN      21-JAN-1999
    S.cerevisiae PPH22 gene for protein phosphatase 2A.
    PPH22 gene; protein phosphatase 2A; TFP1/VMA1; orf between TFP1/VMA1 and
     PPH22; PPH22; orf 3' to PPH22.

SCPPH3      X58858     2884bp    DNA      PLN      21-JAN-1999
    S.cerevisiae PPH3 gene for type 2A-related protein phosphatase 2A.
    PPH3 gene; type 2A-related protein phosphatase; orf 5' to PPH3; PPH3.

SCPPR2      X00047     1132bp    DNA      PLN      11-FEB-1999
    Yeast regulatory gene PPR2 (pyrimidine pathway regulatory 2) regulating
     expression of gene URA4 for dihydrooratase.
    regulatory protein.

SCPRP22GE   X58681     3940bp    DNA      PLN      21-JAN-1999
    S.cerevisiae DNA for PRP22 gene.
    PRP22 gene; PRP22.

SCSLA2PA    Z22811     3924bp    DNA      PLN      22-JAN-1999
    S.cerevisiae of Sla2p gene.
    membrane cytoskeleton assembly; Sla2p gene; synthetical lethal with
     ABP1,#2.

SCSUA5DNA   X64319     2065bp    DNA      PLN      04-DEC-1998
    S.cerevisiae SUA5 gene.
    PMR1 gene; SUA5 gene; suppressor; SUA5; PMR1.

SCU24271    U24271      490bp    DNA      PLN      25-MAR-1999
    Saccharomyces cerevisiae tetra hydrofolate reductase (MTR1) gene, partial
     cds.
    MTR1; tetra hydrofolate reductase.

SCU31377    U31377     3570bp    DNA      PLN      25-MAR-1999
    Saccharomyces cerevisiae Nmd1p (NMD1) gene, complete cds.
    NMD1; Nmd1p.

SCU40390    U40390     2622bp    DNA      PLN      29-DEC-1998
    Saccharomyces cerevisiae D-arabinono-1,4-lactone oxidase gene, complete
     cds.
    D-arabinono-1,4-lactone oxidase.

SCU90136    U90136 M86595     2891bp    ds-RNA   PLN      31-DEC-1998
    Saccharomyces cerevisiae RNA-dependent RNA polymerase gene, complete cds.
    RNA-dependent RNA polymerase.

SCYBL068W   Z35829 Y13134     2098bp    DNA      PLN      04-DEC-1998
    S.cerevisiae chromosome II reading frame ORF YBL068w.
    AST1; PRS4.

YSCMTARS2   L00108      528bp    DNA      PLN      30-SEP-1988
    Yeast (S.cerevisiae) mitochondrial DNA subfragment Alu B2.
    origin of replication; transfer RNA; transfer RNA-Ser.

YSCRRA      K01047      121bp    rRNA     PLN      09-FEB-1999
    Saccharomyces cerevisiae 5S ribosomal RNA gene, complete sequence.
    5S ribosomal RNA; ribosomal RNA.

YSTAKYAMT   M35511      563bp    mRNA     PLN      25-MAY-1994
    Saccharomyces cerevisiae mitochondrial adenylate kinase (AKY2) gene, 5'
     end.
    adenylate kinase.


Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
     Only Yeast:  http://genome-www.stanford.edu/cgi-bin/genbank_search
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://ftp2.ddbj.nig.ac.jp:8000/cgi-bin/getent/





More information about the Yeast mailing list