New Saccharomyces Sequences 03/30/99
SGD Sequences
yeast-seq at genome.stanford.edu
Wed Mar 31 13:38:10 EST 1999
====================== New DNA Sequences =======================
SCYGL263W Z72785 Y13135 5311bp DNA PLN 12-MAR-1999
S.cerevisiae chromosome VII reading frame ORF YGL263w.
COS12.
=========== Updated Sequence Features/Annotations =============
AB003521 AB003521 2903bp DNA PLN 22-JAN-1999
Saccharomyces cerevisiae gene for flocculin, partial cds.
flocculin; Lg-FLO1.
AB013497 AB013497 2861bp DNA PLN 09-JAN-1999
Saccharomyces cerevisiae RER2 gene for cis-prenyltransferase, complete
cds.
cis-prenyltransferase; RER2.
AB013498 AB013498 3032bp DNA PLN 09-JAN-1999
Saccharomyces cerevisiae SRT1 gene for cis-prenyltransferase homologue,
complete cds.
cis-prenyltransferase homologue; SRT1.
AB015285 AB015285 657bp DNA PLN 06-FEB-1999
Saccharomyces cerevisiae gene for Mog1, complete cds.
Mog1; MOG1.
AB016599 AB016599 3104bp mRNA PLN 06-FEB-1999
Saccharomyces cerevisiae mRNA for Y'-helicase protein 1, complete cds.
Y'-Help1; Y'-helicase protein 1.
AB017166 AB017166 915bp DNA PLN 20-FEB-1999
Saccharomyces cerevisiae GPI12 gene, complete cds.
GPI12.
AB017626 AB017626 480bp DNA PLN 08-JAN-1999
Saccharomyces cerevisiae ScGNA1 gene for acetyltransferase, complete cds.
acetyltransferase; ScGNA1.
AB018078 AB018078 4611bp DNA PLN 10-DEC-1998
Saccharomyces cerevisiae gene for oligo-1,4 -1,4-glucantransferase /
amylo-1,6-glucosidase, complete cds.
oligo-1,4 - 1,4-glucantransferase / amylo-1,6-glucosidase.
AF004913 AF004913 2106bp DNA PLN 23-MAR-1999
Saccharomyces cerevisiae translation initiation factor 3 p33 subunit
(TIF35) gene, complete cds.
TIF35; translation initiation factor 3 p33 subunit.
AF005702 AF005702 568bp DNA PLN 15-JAN-1999
Saccharomyces cerevisiae 25S ribosomal RNA gene, partial sequence.
25S rRNA.
AF013167 AF013167 1708bp DNA PLN 02-JAN-1999
Saccharomyces cerevisiae MSS1 gene, complete cds.
MSS1.
AF016262 AF016262 1479bp mRNA PLN 04-MAR-1999
Saccharomyces cerevisiae overproduction induced pheromone resistant yeast
1 (OPY1) mRNA, complete cds.
OPY1; overproduction induced pheromone resistant yeast 1.
AF016263 AF016263 1083bp mRNA PLN 04-MAR-1999
Saccharomyces cerevisiae overproduction induced pheromone resistant yeast
2 (OPY2) mRNA, complete cds.
OPY2; overproduction induced pheromone resistant yeast 2.
AF017142 AF017142 1167bp DNA PLN 08-FEB-1999
Saccharomyces cerevisiae ADP-ribosylation factor-like protein 1 (ARP1)
gene, complete cds.
ARP1; ADP-ribosylation factor-like protein 1.
AF039063 AF039063 M63893 2514bp mRNA PLN 01-JAN-1999
Saccharomyces cerevisiae RNA-dependent RNA polymerase mRNA, complete cds.
RNA-dependent RNA polymerase.
AF059310 AF059310 372bp mRNA PLN 22-JAN-1999
Saccharomyces cerevisiae Sem1p (SEM1) mRNA, complete cds.
SEM1; Sem1p.
AF065136 AF065136 270bp DNA PLN 17-DEC-1998
Saccharomyces cerevisiae deleted in split hand/split foot 1 protein
homolog (DSH1) gene, complete cds.
DSH1; deleted in split hand/split foot 1 protein homolog.
AF073791 AF073791 204bp DNA PLN 06-JAN-1999
Saccharomyces cerevisiae ATP synthase subunit i (ATP18) gene, nuclear
gene encoding mitochondrial protein, complete cds.
ATP18; ATP synthase subunit i.
AF080089 AF080089 429bp DNA PLN 12-JAN-1999
Saccharomyces cerevisiae cytidine deaminase Cdd1p (CDD1) gene, complete
cds.
CDD1; cytidine deaminase Cdd1p.
AF090442 AF090442 843bp DNA PLN 09-DEC-1998
Saccharomyces cerevisiae d3,d2-enoyl CoA isomerase ECI1 gene, complete
cds.
d3,d2-enoyl CoA isomerase ECI1.
AF100952 AF100952 100bp mRNA PLN 28-FEB-1999
Saccharomyces cerevisiae SUR4 gene, 3' flanking region.
SUR4.
AF100953 AF100953 100bp mRNA PLN 28-FEB-1999
Saccharomyces cerevisiae NIP29 gene, 3' flanking region.
NIP29.
AF108188 AF108188 333bp DNA PLN 03-FEB-1999
Saccharomyces cerevisiae RNA polymerase III C11 subunit (RPC11) gene,
complete cds.
RPC11; RNA polymerase III C11 subunit.
AF112860 AF112860 870bp DNA PLN 28-JAN-1999
Saccharomyces cerevisiae aquaporin 2 (AQY2) gene, complete cds.
AQY2; aquaporin 2.
AF117345 AF117345 1805bp DNA PLN 28-FEB-1999
Saccharomyces cerevisiae checkpoint protein kinase homolog Chk1 (CHK1)
gene, partial cds.
CHK1; checkpoint protein kinase homolog Chk1.
D87841 D87841 7244bp DNA PLN 30-JAN-1999
Saccharomyces cerevisiae IKI3 gene, complete cds.
Iki3p; IKI3.
D89860 D89860 697bp DNA PLN 22-JAN-1999
Saccharomyces cerevisiae gene for flocculin, partial cds.
flocculin; Lg-FLO1.
MISC23 V00703 865bp DNA PLN 04-DEC-1998
Yeast mitochondrial oxi3 gene fragment with part of the intron aI4.
Contains an open reading frame for a putative enzyme involved in
splicing the cytochrome b gene.
cytochrome.
S43129 S43129 182bp mRNA PLN 09-FEB-1993
RIM1=single-stranded DNA binding protein [Saccharomyces cerevisiae=yeast,
mRNA Partial, 182 nt].
RIM1.
S45861 S45861 89bp DNA PLN 05-JAN-1993
actin {cryptic promoter, intron 1} [Saccharomyces cerevisiae=yeast,
Genomic, 89 nt].
actin.
S48033 S48033 328bp mRNA PLN 26-JAN-1993
MFA2=a-mating factor [Saccharomyces cerevisiae, mRNA, 328 nt].
MFA2.
S48552 S48552 4740bp DNA PLN 10-JUL-1992
orf YCR021. . .orf YCR041 [Saccharomyces cerevisiae, Genomic, 3 genes,
4740 nt].
orf YCR021; CDC10; orf YCR041.
S58126 S58126 16956bp DNA PLN 19-JUN-1995
LEU1-ATE1 loci: LEU1. . .YGL029 [Saccharomyces cerevisiae, Genomic, 14
genes, 16956 nt].
LEU1; YGL021; SCl1; YGL022; YGL025; PDR1; YGL023; YGL026; YGL024; PDR6;
YGL027; YGL028; ATE1; YGL029.
S61041 S61041 1260bp DNA PLN 06-AUG-1993
PHO81=PHO5 regulatory factor {promoter} [Saccharomyces cerevisiae,
Genomic, 1260 nt].
PHO81.
S65964 S65964 7529bp DNA PLN 29-NOV-1993
ARC: TIF51A. . .UTR2 [Saccharomyces cerevisiae, Genomic, 7 genes, 7529
nt].
TIF51A; UTR5; ANP1; RAD23; UTR4; CYC7; UTR2.
S67408 S67408 612bp DNA PLN 09-MAR-1994
MAG=3-methyladenine DNA glycosylase {promoter} [Saccharomyces cerevisiae,
Genomic, 612 nt].
MAG.
SC114 X68577 S47699 11437bp DNA PLN 06-FEB-1999
S. cerevisiae 11.4kb segment of chromosome II.
autonomously replicating; acetyl CoA hydrolase; ACH1 gene; ARS; PEP1;
transmembrane protein; FUS3; protein kinase; ACH1; acetyl-CoA hydrolase;
YBL03.20; YBL03.19.
SC3085 Z68111 U00094 10339bp DNA PLN 04-DEC-1998
S.cerevisiae chromosome XVI PCR product 3085.
eukaryotic iniation factor 5; GLN1; glutamine synthetase; TIF5; vacuolar
H(+)-ATPase 54 kda subunit; VMA13; Gln1p; Vma13p; YP3085.03c; YP3085.04;
Tif5p; YP3085.06c.
SCBPPS X79743 33852bp DNA PLN 02-MAR-1999
S.cerevisiae BET1, PAN1 PRI1 and STS1 genes.
BET1 gene; PAN1 gene; PRI1 gene; sts1+ gene; tRNA-Glu gene; BET1; BET1
protein; PAN1; PAN1 protein; tRNA-Glu; PRI1; PRI1 protein; STS1; STS1
protein.
SCCHROIV X82086 32821bp DNA PLN 21-JAN-1999
S.cerevisiae DNA for right arm of chromosome IV.
leucine; AFR1 gene; arginine tRNA; endoplasmic reticulum protein; D4405;
8 putative transmembrane spans; D4406; 1 putative transmembrane span;
D4416; D4411; trehalose-6-phosphate synthase /phosphatase; D4421;
protein phosphatase 2A; D4426; D4431; D4436; 3 putative transmembrane
spans; D4441; 1 putative transmembrane spans; D4446; D4451; D4456;
D4461; 2 putative transmembrane spans; D4466; 4 putative transmembrane
spans; D4471; D4472; D4473; D4475; protein of endoplasmic reticulum;
D4478; D4483; splicing factor; D4490; arginine t-RNA; D4495; 1 leucine
zipper pattern.
SCDFR1G X16541 2601bp DNA PLN 01-MAR-1999
Saccharomyces cerevisiae DNA for dihydrofolate reductase (EC 1.5.1.3).
dihydrofolate reductase.
SCDSPISA X71622 11719bp DNA PLN 01-MAR-1999
Saccharomyces cerevisiae DNA sequence for Kazal serine protease inhibitor
signature.
Kazal serine protease inhibitor; transfer RNA.
SCE011856 AJ011856 85779bp DNA PLN 19-JAN-1999
Saccharomyces cerevisiae complete mitochondrial genome.
tP(TGG)Q - systematic name; tW(TCA)Q - systematic name; COX1; SCAI5alpha;
I-SCEII; I-SCEIII; SCAI2; SCAI1; SCAI5beta; ATP8; ATP6; tE(TTC)Q -
systematic name; SCBI2; CYTB; SCBI4; SCBI3; ATP9; tS(TGA)Q2 - systematic
name; VAR1; SCEI; tT(TGT)Q1 - systematic name; tC(GCA)Q - systematic
name; tH(GTG)Q - systematic name; tL(TAA)Q - systematic name; tQ(TTG)Q -
systematic name; tK(TTT)Q - systematic name; tR(TCT)Q1 - systematic
name; tG(TCC)Q - systematic name; tD(GTC)Q - systematic name; tS(GCT)Q1
- systematic name; tR(ACG)Q2 - systematic name; tA(TGC)Q - systematic
name; tI(GAT)Q - systematic name; tY(GTA)Q - systematic name; tN(GTT)Q -
systematic name; tM(CAT)Q1 - systematic name; COX2; tF(GAA)Q -
systematic name; tT(xxx)Q2 - systematic name; tV(TAC)Q - systematic
name; COX3; tM(CAT)Q2 - systematic name.
SCMIF2A Z18294 2161bp DNA PLN 04-DEC-1998
Saccharomyces cerevisiae of MIF2 gene.
MIF2 gene; Mif2 protein; MIF2.
SCPPH21 X58856 2249bp DNA PLN 21-JAN-1999
S.cerevisiae PPH21 gene for protein phosphatase 2A.
PPH21 gene; protein phosphatase 2A; PPH21.
SCPPH22 X58857 4177bp DNA PLN 21-JAN-1999
S.cerevisiae PPH22 gene for protein phosphatase 2A.
PPH22 gene; protein phosphatase 2A; TFP1/VMA1; orf between TFP1/VMA1 and
PPH22; PPH22; orf 3' to PPH22.
SCPPH3 X58858 2884bp DNA PLN 21-JAN-1999
S.cerevisiae PPH3 gene for type 2A-related protein phosphatase 2A.
PPH3 gene; type 2A-related protein phosphatase; orf 5' to PPH3; PPH3.
SCPPR2 X00047 1132bp DNA PLN 11-FEB-1999
Yeast regulatory gene PPR2 (pyrimidine pathway regulatory 2) regulating
expression of gene URA4 for dihydrooratase.
regulatory protein.
SCPRP22GE X58681 3940bp DNA PLN 21-JAN-1999
S.cerevisiae DNA for PRP22 gene.
PRP22 gene; PRP22.
SCSLA2PA Z22811 3924bp DNA PLN 22-JAN-1999
S.cerevisiae of Sla2p gene.
membrane cytoskeleton assembly; Sla2p gene; synthetical lethal with
ABP1,#2.
SCSUA5DNA X64319 2065bp DNA PLN 04-DEC-1998
S.cerevisiae SUA5 gene.
PMR1 gene; SUA5 gene; suppressor; SUA5; PMR1.
SCU24271 U24271 490bp DNA PLN 25-MAR-1999
Saccharomyces cerevisiae tetra hydrofolate reductase (MTR1) gene, partial
cds.
MTR1; tetra hydrofolate reductase.
SCU31377 U31377 3570bp DNA PLN 25-MAR-1999
Saccharomyces cerevisiae Nmd1p (NMD1) gene, complete cds.
NMD1; Nmd1p.
SCU40390 U40390 2622bp DNA PLN 29-DEC-1998
Saccharomyces cerevisiae D-arabinono-1,4-lactone oxidase gene, complete
cds.
D-arabinono-1,4-lactone oxidase.
SCU90136 U90136 M86595 2891bp ds-RNA PLN 31-DEC-1998
Saccharomyces cerevisiae RNA-dependent RNA polymerase gene, complete cds.
RNA-dependent RNA polymerase.
SCYBL068W Z35829 Y13134 2098bp DNA PLN 04-DEC-1998
S.cerevisiae chromosome II reading frame ORF YBL068w.
AST1; PRS4.
YSCMTARS2 L00108 528bp DNA PLN 30-SEP-1988
Yeast (S.cerevisiae) mitochondrial DNA subfragment Alu B2.
origin of replication; transfer RNA; transfer RNA-Ser.
YSCRRA K01047 121bp rRNA PLN 09-FEB-1999
Saccharomyces cerevisiae 5S ribosomal RNA gene, complete sequence.
5S ribosomal RNA; ribosomal RNA.
YSTAKYAMT M35511 563bp mRNA PLN 25-MAY-1994
Saccharomyces cerevisiae mitochondrial adenylate kinase (AKY2) gene, 5'
end.
adenylate kinase.
Please note that new sequences take about a week to appear in SGD. To
obtain any of the yeast GenBank sequences use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web links for sequences:
Only Yeast: http://genome-www.stanford.edu/cgi-bin/genbank_search
BLAST & FASTA: http://genome-www.stanford.edu/Saccharomyces/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://ftp2.ddbj.nig.ac.jp:8000/cgi-bin/getent/
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