ORF similarity

Mike Cherry cherry at genome.stanford.edu
Sun Oct 3 20:04:14 EST 1999


SGD provides a set of tables listing the results of an all ORFs
translations compared to all ORF translations from a TimeLogics
DeCypher machine using their Smith-Waterman implementation.  The
graphical interface to these tables is at:

   http://genome-www.stanford.edu/cgi-bin/SGD/SWA/swaEntryForm.pl

The TAB delimited tables are available via anonymous ftp from the
address below.  One file per chromosome.

   ftp://genome-ftp.stanford.edu/yeast/tables/ORF_similarities/

Mike

J. Michael Cherry, Ph.D.         Internet: cherry at genome.stanford.edu
Department of Genetics           Stanford University School of Medicine
Medical Center, Room M341        Stanford, California  94305-5120
Voice:    650-723-7541           FAX: 650-723-7016


> 
> Hello,
> 
> Does anyone has data on the similarity of yeast orfs. Thus, i'm looking
> for
> a table that expresses the similarity between every combination of two
> orfs.
> 
> Regards,
> 
> Antoine van Kampen





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