New Saccharomyces Sequences 02/18/01

SGD Sequences yeast-seq at genome.stanford.edu
Mon Feb 19 00:36:23 EST 2001


====================== New DNA Sequences =======================

AF321540    AF321540      781bp    DNA      PLN      07-FEB-2001
    Saccharomyces cerevisiae 18S ribosomal RNA gene, partial sequence;
     internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal
     transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene,
     partial sequence.
    18S ribosomal RNA; internal transcribed spacer 1; 5.8S ribosomal RNA;
     internal transcribed spacer 2; 28S ribosomal RNA.

AY013705S1  AY013705      360bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae strain KNU5377 internal transcribed spacer 1,
     partial sequence.
    internal transcribed spacer 1.

AY013705S2  AY013706      234bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae strain KNU5377 internal transcribed spacer 2,
     complete sequence.
    internal transcribed spacer 2.

YSCL8083    U19027 Y13138    41454bp    DNA      PLN      02-FEB-2001
    Saccharomyces cerevisiae chromosome XII cosmid 8083.
    YLR219W; Ylr219wp; CCC1; CCC1p: putative transmembrane Ca2+ transporter;
     YLR221C; Ylr221cp; YLR222C; Ylr222cp; IFH1; Ifh1p; YLR224W; Ylr224wp;
     YLR225C; Ylr225cp; YLR226W; Ylr226wp; YLR227C; Ylr227cp; tL(UAG)L1;
     tRNA-Leu; YLR228C; Ylr228cp; CDC42; Cdc42p: member of the Rho subfamily
     of Ras-like proteins; tI(UAU)L; tRNA-Ile; YLR231C; YLR232W; Ylr232wp;
     EST1; Est1p: Telomere elongation protein; TOP3; Top3p: DNA Topoisomerase
     III; THI7; Thi7p: thiamine transporter; YLR238W; Ylr238wp; YLR239C;
     Ylr239cp; VPS34; Vps34p.

YSCL9470    U17246 Y13138    40738bp    DNA      PLN      02-FEB-2001
    Saccharomyces cerevisiae chromosome XII cosmid 9470.
    SEC10; Sec10p: 100 kDa component of the Exocyst complex; UBI3; Ubi3p:
     Ubiquitin fused to ribosomal protein S27A; MSF1'; Msf1p'; YLR169W;
     Ylr169wp; APS1; Aps1p: clathrin coat assembly protein complex, small
     subunit; YLR171W; Ylr171wp; DPH5; Dph5p: diphthine synthase; YLR173W;
     Ylr173wp; IDP2; Idp2p: isocitrate dehydrogenase; CBF5; Cbf5p:
     centromere/microtubule binding protein; YLR176C; Ylr176cp; YLR177W;
     Ylr177wp; TFS1; Tfs1p: CDC25-dependent, ammonia-responsive cell-cycle
     regulator; YLR179C; Ylr179cp; SAM1; Sam1p: S-adenosylmethionine
     synthetase; YLR181C; Ylr181cp; SWI6; Swi6p: Transcriptional regulatory
     protein; YLR183C; Ylr183cp; YLR184W; Ylr184wp; RPL35A; Rpl35ap: 60S
     ribosomal protein L37; YLR186W; Ylr186wp; YLR187W; Ylr187wp; MDL1;
     Mdl1p; YLR189C; Ylr189cp; YLR190W; Ylr190wp; PEX13; Pex13p.

YSCL9638    U19102 Y13138    15175bp    DNA      PLN      02-FEB-2001
    Saccharomyces cerevisiae chromosome XII cosmid 9638.
    YLR351C; Ylr351cp; YLR352W; Ylr352wp; BUD8; Bud8p; TAL1; Tal1p:
     Transaldolase; ILV5; Ilv5p: acetohydroxyacid reductoisomerase; YLR356W;
     Ylr356wp; YLR357W; Ylr357wp; YLR358C; Ylr358cp; ADE13; Ade13p:
     adenylosuccinate lyase.

YSCLYS2A    M36287 M14967 M14968     4980bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae alpha-aminoadipate reductase (LYS2) gene,
     complete cds.
    LYS2; alpha-aminoadipate reductase.

YSCMTCG01   L36885 M62622      907bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion 21S R2 ribosomal RNA, 3' end.
    21S R2 ribosomal RNA.

YSCMTCG02   L36886 M62622     1816bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion transfer RNA-Thr2 (tRNA-Thr2);
     transfer RNA-Cys (tRNA-Cys); transfer RNA-His (tRNA-His) genes.
    tRNA-Thr; tRNA-Cys; tRNA-His.

YSCMTCG03   L36887 M62622     6340bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion transfer RNA- Leu, Gln, Lys, Arg,
     Gly, Asp, Ser2, Arg2, Ala, Ile, Tyr, Asn genes.
    tRNA-Leu; tRNA-Gln; tRNA-Lys; tRNA-Arg; tRNA-Gly; tRNA-Asp; tRNA-Ser;
     tRNA-Ala; tRNA-Ile; tRNA-Tyr; tRNA-Asn.

YSCMTCG04   L36888 M62622     3804bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion transfer RNA-Met (tRNA-Met) gene,
     oxiI gene, and ORF1.
    tRNA-Met; oxiI.

YSCMTCG05   L36889 M62622      370bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion transfer RNA-Phe (tRNA-Phe) gene.
    tRNA-Phe.

YSCMTCG06   L36890 M62622     6591bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion transfer RNA-Thr1 (tRNA-Thr) gene;
     transfer RNA-Val (tRNA-Val) gene; oxi2 gene, complete cds; ORF2 and
     origin of replication (ori5).
    tRNA-Thr; tRNA-Val; oxi2.

YSCMTCG07   L36891 M62622     2606bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion transfer RNA-fMet (tRNA-fMet)
     gene; transfer RNA-Pro (tRNA-Pro) gene; 9S ribosomal RNA (9S rRNA) gene.
    tRNA-Met; 9S ribosomal RNA; tRNA-Pro.

YSCMTCG08   L36892 M62622      802bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion DNA segment.

YSCMTCG09   L36893 M62622     1215bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion origin of replication (oriI).

YSCMTCG10   L36894 M62622      481bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion DNA segment.

YSCMTCG11   L36895 M62622     4350bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion 15S ribosomal RNA (15S rRNA) gene;
     ORF3; transfer RNA-Trp (tRNA-Trp) gene.
    15S ribosomal RNA; tRNA-Trp.

YSCMTCG12   L36896 M62622     1497bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion origin of replication (ori8).

YSCMTCG13   L36897 M62622    21153bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion oxi3 gene, aapI gene, oli2 gene,
     ORF4, replication of origin (ori7 and ori2), and ORF5.
    oxi3; aapI; oli2.

YSCMTCG14   L36898 M62622     5321bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion transfer RNA-Glu (tRNA-Glu) gene.
    tRNA-Glu.

YSCMTCG15   L36899 M62622     8316bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion origin of replication (ori6) and
     oli1 gene, complete cds.
    oli1.

YSCMTCG16   L36900 M62622     3542bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion transfer RNA-Ser1 (tRNA-Ser) gene
     and varI gene, complete cds.
    tRNA-Ser; varI.

YSCMTCG17   L36901 M62622     1748bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion DNA segment.

YSCMTCG18   L36902 M62622     2858bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion origin of replication (ori3 and
     ori4).

YSCMTCG19   L36903 M62622     4785bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae mitochondrion 21S ribosomal RNA (21S rRNA) gene,
     21S R2 ribosomal RNA (21S R2 rRNA) gene, and ORF RI.
    21S ribosomal RNA; 21S R2 ribosomal RNA.

==================== Updated DNA Sequences =====================

D42168      D42168     3488bp    DNA      PLN      24-JAN-2001
    Saccharomyces cerevisiae DPB11 DNA for subunit of DNA polymerase II,
     complete cds.
    DPB11; subunit of DNA polymerase II.

=========== Updated Sequence Features/Annotations  =============

AF217406    AF217406     1137bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae uridine nucleosidase (URH1) gene, complete cds.
    URH1; uridine nucleosidase.

AF280542    AF280542     1032bp    DNA      PLN      05-FEB-2001
    Saccharomyces cerevisiae microtubule-associated protein Dam1p (DAM1)
     gene, complete cds.
    DAM1; microtubule-associated protein Dam1p.

SCU01300    U01300     1241bp    DNA      PLN      12-FEB-2001
    Saccharomyces cerevisiae S288C Sic1p (SIC1) gene, complete cds.
    BOS1; Bos1p; SIC1; Sic1p.

YSCTGP      M11243      819bp    ss-DNA   PLN      12-FEB-2001
    Saccharomyces cerevisiae Pro-tRNA suppressor Suf7 gene.
    tRNA-Pro.


Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI query (Entrez)
e-mail server, query at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html
     EBI (EMBL):  http://www.ebi.ac.uk/embl/Access/index.html
           DDBJ:  http://www.ddbj.nig.ac.jp/searches-e.html


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