New Saccharomyces Sequences 11/01/03

SGD Sequences yeast-seq at genome.stanford.edu
Sat Nov 1 20:09:39 EST 2003


====================== New DNA Sequences =======================

AB036928    AB036928      933bp    linear   PLN      02-OCT-2003
    Saccharomyces cerevisiae ATP3b gene for F1F0-ATPase gamma subunit,
     partial cds.
    ATP3b; F1F0-ATPase gamma subunit.

AB036929    AB036929      933bp    linear   PLN      02-OCT-2003
    Saccharomyces cerevisiae ATP3a gene for F1F0-ATPase gamma subunit,
     partial cds.
    ATP3a; F1F0-ATPase gamma subunit.

AB109221    AB109221     1770bp    linear   PLN      28-OCT-2003
    Saccharomyces cerevisiae im mRNA for oligo-1,6-glucosidase, complete cds.
    im; oligo-1,6-glucosidase.

AX799086    AX799086     2733bp    linear   PAT      08-OCT-2003
    Sequence 5 from Patent WO03054008.

AY387706    AY387706     2235bp    linear   PLN      07-OCT-2003
    Saccharomyces cerevisiae ubiquitin ligase Cul3 (CUL3) gene, complete cds.
    CUL3; ubiquitin ligase Cul3.

AY387707    AY387707     2529bp    linear   PLN      07-OCT-2003
    Saccharomyces cerevisiae ubiquitin ligase Cul8 (CUL8) gene, complete cds.
    CUL8; ubiquitin ligase Cul8.

AY389296S1  AY389296      241bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YDR305Cp (YDR305C) mRNA, 5' UTR and partial cds.
    YDR305C; YDR305Cp.

AY389296S2  AY389295      204bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YDR305Cp (YDR305C) mRNA, 3' UTR and partial cds.
    YDR305C; YDR305Cp.

AY389297    AY389297      215bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YGR095Cp (YGR095C) mRNA, 5' UTR and partial cds.
    YGR095C; YGR095Cp.

AY389299S1  AY389299      168bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YGR174Cp (YGR174C) mRNA, 5' UTR and partial cds.
    YGR174C; YGR174Cp.

AY389299S2  AY389298      303bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YGR174Cp (YGR174C) mRNA, 3' UTR and partial cds.
    YGR174C; YGR174Cp.

AY389301S1  AY389301      251bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YHR064Cp (YHR064C) mRNA, 5' UTR and partial cds.
    YHR064C; YHR064Cp.

AY389301S2  AY389300      234bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YHR064Cp (YHR064C) mRNA, 3' UTR and partial cds.
    YHR064C; YHR064Cp.

AY389303S1  AY389303      261bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YHR065Cp (YHR065C) mRNA, 5' UTR and partial cds.
    YHR065C; YHR065Cp.

AY389303S2  AY389302      194bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YHR065Cp (YHR065C) mRNA, 3' UTR and partial cds.
    YHR065C; YHR065Cp.

AY389305S1  AY389305      275bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YNR020Cp (YNR020C) mRNA, 5' UTR and partial cds.
    YNR020C; YNR020Cp.

AY389305S2  AY389304      179bp    linear   PLN      20-OCT-2003
    Saccharomyces cerevisiae YNR020Cp (YNR020C) mRNA, 3' UTR and partial cds.
    YNR020C; YNR020Cp.

=========== Updated Sequence Features/Annotations  =============

AF081667    AF081667      444bp    linear   PLN      01-OCT-2003
    Saccharomyces cerevisiae calmodulin gene, complete cds.
    calmodulin.

MISC09      V00690 J01529      707bp    linear   PLN      01-OCT-1996
    Rep1 region of yeast mitochondrion.
    repetitive sequence.

SCCYH2      X01573 K01162     1393bp    linear   PLN      10-APR-1993
    Yeast CYH2 gene for ribosomal protein L29.
    ribosomal protein; ribosomal protein L29.

SCD8035     U33050 Z71256    69009bp    linear   PLN      14-OCT-2003
    Saccharomyces cerevisiae chromosome IV cosmids 9410, 8035, 8166, and
     9787.
    TOM1; Tom1p; YDR458C; Ydr458cp; YDR459C; Ydr459cp; TFB3; Tfb3p: TFIIH
     subunit Tfb3; MFA1; Mfa1p: a-factor mating pheromone precursor; YDR462W;
     Ydr462wp; STP1; Stp1p; SPP41; Spp41p: Negative regulator of prp genes;
     YDR465C; YDR466W; Ydr466wp; YDR467C; Ydr467cp; YDR468C; Ydr468cp;
     YDR469W; Ydr469wp; YDR470C; Ydr470cp; RPL27B; Rpl27bp: 60S ribosomal
     protein L27, identical to Yhr010p from GenBank Accession Number U10400;
     SNR13; YDR472W; Ydr472wp; YDR473C; Ydr473cp; YDR475C; Ydr475cp; YDR476C;
     Ydr476cp; SNF1; Snf1p: serine/threonine protein kinase; SNM1; Snm1p:
     RNAse MRP protein component; YDR479C; Ydr479cp; DIG2; Dig2p: MAP kinase
     associated protein; PHO8; Pho8p: repressible alkaline phosphatase;
     YDR482C; Ydr482cp; KRE2; Kre2p: alpha-1,2-mannosyltransferase; SAC2;
     Sac2p: suppressor of actin mutations; YDR485C; Ydr485cp; YDR486C;
     Ydr486cp; RIB3; Rib3p: 3,4-dihydroxy-2-butanone 4-phosphate synthase;
     PAC11; Pac11p; YDR489W; Ydr489wp; YDR490C; Ydr490cp; YDR491C; Ydr491cp;
     YDR492W; Ydr492wp; YDR493W; Ydr493wp; YDR494W; Ydr494wp.

SCPH02      V01319 J01344      381bp    linear   PLN      07-JUL-1991
    Yeast gene PHO5 fragment encoding a repressible acid phosphatase (5'
     flanking region with first AUG codon).
    acid phosphatase; phosphatase.

SCTRNM3     Z00037 J01372 V01332      809bp    linear   PLN      31-MAR-1992
    Yeast (S.cerevisiae) Met-tRNA-3 gene and flanking regions.
    transfer RNA; transfer RNA-Met; tRNA-Met.

SCTRP1      V01341 J01374     1457bp    linear   PLN      22-MAY-1995
    Yeast gene trp1 coding for N-C5'phosphoribosyl-anthranilate isomerase.
    isomerase; trp1.

YSCCHR1RAA  L28920 U00091    54812bp    linear   PLN      14-OCT-2003
    Saccharomyces cerevisiae chromosome I right arm sequence.
    Yar030p; Yar040p; acid phosphatase; carnitine N-acetyltransferase;
     homologue; membrane spanning; transfer RNA-Leu; transfer RNA-Ser;
     YAL020C; Yal020cp; YAR023C; Yar023cp; SUP56; tRNA-Leu; tS(AGA)A;
     tRNA-Ser; YAR027W; Yar027wp; YAL028W; Yar028wp; YAR029W; Yar029wp;
     YAR030C; Yar030cp; YAR031W; Yar031wp; YAR033W; Yar033wp; YAT1; Yat1p;
     YAR042W; Yar042wp; YAR047C; Yar047cp; FLO1; Flo1p; YAR053W; Yar053wp;
     YAR060C; Yar060cp; YAR061W; Yar061wp; YAR062W; Yar062wp; YAR064W;
     Yar064wp; YAR066W; Yar066wp; YAR068W; Yar068wp; YAR069C; Yar069cp;
     YAR070C; Yar070cp; PHO11; Pho11p; YAR073W; Yar073wp; YAR075W; Yar075wp.

YSCP9513    U51033 U00094    44455bp    linear   PLN      14-OCT-2003
    Saccharomyces cerevisiae chromosome XVI cosmid 9513.
    SPE3; Spe3p: putrescine aminopropyltransferase(spermidine synthase);
     YPR070W; Ypr070wp; YPR071W; Ypr071wp; tS(UGA)P; tRNA-Ser; YPR072W;
     Ypr072wp; LTP1; Ltp1p: 18-kDa phosphotyrosine phosphatase; TKL1; Tkl1p:
     Transketolase 1; YPR075C; Ypr075cp; YPR076W; Ypr076wp; YPR077C;
     Ypr077cp; YPR078C; Ypr078cp; YPR079W; Ypr079wp; TEF1; Tef1p: Elongation
     factor 1-alpha; YPR081C; Ypr081cp; YPR082C; Ypr082cp; YPR083W; Ypr083wp;
     YPR084W; Ypr084wp; YPR085C; Ypr085cp; SUA7; Sua7p: Transcription
     initiation factor IIB (Swiss Prot. accession number P29055); YPR087W;
     Ypr087wp; SRP54; Srp54p: Signal recognition particle 54 kd subunit
     (Swiss Prot. accession number P20424); YPR089W; Ypr089wp; YPR091C;
     Ypr091cp; YPR092W; Ypr092wp; YPR093C; Ypr093cp; YPR094W; Ypr094wp;
     YPR095C; Ypr095cp; YPR096C; Ypr096cp; YPR097W; Ypr097wp.


World Wide Web hyperlinks for sequence information:
  BLAST & FASTA:  http://www.yeastgenome.org/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html
     EBI (EMBL):  http://www.ebi.ac.uk/embl/Access/index.html
           DDBJ:  http://www.ddbj.nig.ac.jp/searches-e.html


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