[Yeast] Yeast proteins with cysteines

Mike Cherry via yeast%40net.bio.net (by cherry from stanford.edu)
Thu Aug 9 23:44:59 EST 2007


Nico,

90% of 5884 yeast proteins contain at least one cysteine.

You can download the yeast proteome from many sites.  One of them is  
the Saccharomyces Genome Database.  The link below is to a tool that  
searches sequences for simple or complex patterns.  You can then  
download an excel file with the locations of the hits.

http://www.yeastgenome.org/patmatch

You can also download a FASTA formatted file containing the yeast  
proteins from the SGD FTP site:

ftp://ftp.yeastgenome.org/yeast/sequence/genomic_sequence/orf_protein/ 
orf_trans.fasta.gz

Please write to yeast-curator from yeastgenome.org if you have questions  
about any of this.

-Mike



On Aug 9, 2007, at 5:13 PM, Nicolas Brandes wrote:

> Hi all,
>
>
>
> Is there a database out with all the yeast proteins that contain  
> cysteines? If not, what might be the best way to look for them?  
> Screen all proteins for cysteines – this would take a lot of time.
>
>  Any ideas or suggestions?
>
>
>
> Best,
>
> Nico
>
>
>
>
>
>
>
> -----
>
> Nicolas Brandes
>
> University of Michigan
>
> Department of MCDB
>
>
>
> _______________________________________________
> Yeast mailing list
> Yeast from net.bio.net
> http://www.bio.net/biomail/listinfo/yeast




More information about the Yeast mailing list