Announcement: New zebrafish searches at Ensembl trace repository

lewisk at uoneuro.uoregon.edu lewisk at uoneuro.uoregon.edu
Sun Dec 30 18:43:31 EST 2001


We are now able to offer protein ("TBLASTN style") and translated
DNA ("TBLASTX") searches against the 2.88 gigabases of
zebrafish sequence in the Ensembl trace repository.

The relevant page is http://trace.ensembl.org/perl/ssahaview_trans

These search facilities are powered by a new version of our SSAHA
search engine
(http://www.sanger.ac.uk/Software/analysis/SSAHA/). We hope to
be able to extend this service to selected other organisms in the
near future.

The existing DNA-against-DNA search facility for the trace
repository remains at http://trace.ensembl.org/perl/ssahaview.

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  Dr. Anthony J. Cox                -.   .-. .-.   .-. .-.   .-
  Team 71, Informatics Division,    ||\ /|||X|||\ /|||X|||\ /||
  Wellcome Trust Sanger Institute,  |||X|||/ \|||X|||/ \|||X|||
  Hinxton, Cambridge CB10 1SD, UK   `-' `-'   `-' `-'   `-' `-'
   -.   .-. .-.   .-. .-.   .-
   ||\ /|||X|||\ /|||X|||\ /||      ac2 at sanger.ac.uk
   |||X|||/ \|||X|||/ \|||X|||      www.sanger.ac.uk/Users/ac2/
   `-' `-'   `-' `-'   `-' `-'
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