Zebrafish Genome Browser

Anthony DiBiase adibiase at enders.tch.harvard.edu
Wed Jul 28 02:03:00 EST 2004


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Greeting.

The Zebrafish Genome Initiative at Children's Hospital Boston in
collaboration with Jim Kent's UCSC Informatics Group has produced a first
build of the Danio rerio genome (danRer1) which will be available 30 July
2004 on the web at:

http://genome.ucsc.edu/cgi-bin/hgGateway
(Select zebrafish from the "genome" pulldown on the gateway page)

The following tracks are available as of 30 July 2004:

. Mapping & Sequencing: Position / Conigs / Scaffolds / RH Map / BACEnds /
Gap / GCPercent . Genes & Gene Prediction: RefSeqGenes / EnsemblGenes

. mRNA & EST: ZF mRNAs & ESTs / splicedESTs / nonZF mRNAs

. Expression & Regulation: Affy ZF GeneChip

. Comparative Genomics: Human & Fugu Blastz / Human & Fugu Chain / FuguNet
/ Hg17Blast / Human Known Protein

 . Variation & Repeats: RepeatMasker / SimpleRepeats








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