[Arabidopsis] Arabidopsis Uncapped and Cleaved Transcript Database

Brian D. Gregory via arab-gen%40net.bio.net (by gregory from salk.edu)
Thu May 15 09:49:30 EST 2008

To the Arabidopsis Community,

The sequencing data presented in our paper “A link between RNA  
metabolism and silencing affecting Arabidopsis development”,  
Developmental Cell (2008) 10.1016/j.devcel.2008.04.005, is freely  
accessible in a dynamic Web2.0 based genomic browser called AnnoJ,  
which is designed to effectively handle both current and emerging  
genomic data-types.

The browser displays (from the megabase down to the single base) our  
new deep sequencing data sets of Col-0, abh1-1, ein5-6, and ein5-6  
abh1-1 mutant plants, including:

- smRNA-seq: deep sequencing of the smRNA component of the  

- GMUCT-seq: deep sequencing of uncapped and cleaved transcripts.

These data sets are all open access, and to view them in this browser  
just go to the URL below with Firefox or Safari:


Brian D. Gregory

Damon Runyon Postdoctoral Fellow

Plant Biology Laboratory (Ecker)

The Salk Institute for Biological Studies

10010 North Torrey Pines Rd.

LaJolla, CA 92037

Phone (858) 453-4100 x1533


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