I'm looking for references (published articles, web sites, etc) that
generated a list of TAIR9 or TAIR10 gene models that are NOT
represented on the Affymetrix ATH1 (sometimes called 22K) DNA
One example is this article describing the AGRONOMICS1 array:
Along those same lines, I'm also looking for analyses of "promiscuous"
probe sets on the ATH1 array - these are typically probe sets that
measure expression of multiple genes from the same highly-conserved
paralogous gene families.
If you or some-one you know has done this kind of analysis, I would be
very grateful for a pointer!
Just as a side note, if you are contemplating microarray experiments
using Affymetrix platform arrays, be sure to investigate AGRONOMICS1
as an alternative to the ATH1 or AtTile1R - see