The MIPS PlantsDB group in Germany has a curated repeat database, called mipsREdat, specifically for Plants (as compared to RepBase which encompasses Eukaryota).
Files can be downloaded from their FTP, ftp://ftpmips.helmholtz-muenchen.de/plants/REdat/. They also offer a “eudicots” specific file, which should contain the Brassicales.
> On Dec 2, 2014, at 7:44 AM, Dan Bolser <dbolser from ebi.ac.uk> wrote:
>> Hi all,
>> What are the most commonly used Brassica (or even Brassicaceae) specific
> repeat libraries?
>> How do they differ over 'vanilla' RepBase?
>>> Many thanks,
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