Once again, I am making my "Annotated Guide to the Brookhaven Protein
Data Bank" available. This file includes listings for all of the
files in the January, 1994 release. The main additions this year are a
complete listing of all of the lysozyme files, a better organization of
the DNA files, and, most importantly, structure classifications for all
of the protein chains in the data bank.
There is also a companion file which lists all of the sequence
relations among the individual protein chains. This file is called
the "Sequence Relations" file.
Most importantly, if there are errors, which there probably are, given
that we are dealing with 2327 files, I would appreciate being informed
of such.
Please cite the work as suggested in the files if you use it in your
own work. A write up of the work has been submitted for publication
and may appear later this year. If so, the suggested citation will
change.
Laura Lynn Walsh
------------------- the retrieval instructions follow -------
e-mail) send a message:
select chemistry
cd documents/PDB/PDB_file_list
limit 500kB
size 70kB
get pdb_annot_jan94.txt
get pdb_annot_jan94
get pdb_seq_rel_jan94
quit
to MAILSERV at osc.edu
ftp) ftp infomeister.osc.edu (or ftp 128.146.36.5)
Name: anonymous
Passwd: YOUR_e-mail_address
ftp> cd /pub/chemistry/documents/PDB/PDB_file_list
ftp> get pdb_annot_jan94.txt
ftp> get pdb_annot_jan94
ftp> get pdb_seq_rel_jan94
ftp> quit
gopher) gopher infomeister.osc.edu 73
documents
PDB
PDB_file_list
pdb_annot_jan94
pdb_annot_jan94.txt
pdb_seq_rel_jan94
WWW) http://www.osc.edu/~ccl/documents.html
Protein Data Bank
PDB_file_list
------------------- end retrieval instructions --------------
Laura Walsh, Beckman Institute, University of Illinois
405 N. Mathews Ave., Urbana, IL 61801 (217) 244-2894
lwalsh at silibio.ncsa.uiuc.edu
