Hej,
I need a script/program which can scan an EMBL or Genbank file and
extract all gene names with start-stop, length, type, direction ...
(maybe exon information too)
the output should be something like that:
rice chloroplast:
name type dir start stop length
rps16:x2:2 CDS R 4487 4635 148
rps16:x1:2 CDS R 5514 5553 39
trnQ tRNA R 6615 6687 72
psbK CDS F 7033 7218 185
psbI CDS F 7608 7718 110
trnS tRNA R 7829 7916 87
ORF100 CDS F 8349 8651 302
has anybody seen or written such a script/program (in perl,tcl,C,C++) ?
thx
-thomas
Sicheritz Ponten Thomas E. UPPSALA UNIVERSITY
Vangsbyvaegen 128 S-740 20 Vaenge Biomedical Center
Home: +46 18 364358 Department of Molecular Biology
BMC: +46 18 174379 BOX 590 S-751 24 UPPSALA Sweden
Fax +46 18 557723 http://skydancer.bmc.uu.se/~thomas
Chaos always defeats order,
because it is better organized.
(Terry Pratchett)
