In article <gheavner.64.4B1011DB at voicenet.com>,
George A. Heavner <gheavner at voicenet.com> wrote:
>I am interested in scanning several protein sequences to determine if they
>contain known peptide motifs recognized by different HLA molecules. Can
>anyone tell me if there are programs available that can do this and is there a
>database of identified peptide motifs? PC-based programs are preferred but
>I have Mac or Unix machines as well.
>>I appreciate any assistance that you can provide.
>>George A. Heavner
>
I believe that Intelligenetics and GCG both have programs that can do pattern
searches in sequences. We use the GCG program in the lab, but it is part of
a much bigger analysis program loaded on the departmental server (UNIX-
based).
If you want a database of peptides and motifs, check out the WEHI gopher
site. If you have Web access, you can go to:
gopher://wehi1.wehi.edu.au:70/77/MHCPEP.DB/.index/index
Otherwise, you should be able to simply gopher to wehi.edu.au and maneuver
through the menus.
BioKen
--
Ken Frauwirth (MiSTie #33025) _ _
frauwirt at mendel.berkeley.edu |_) * |/ (_ |\ |
http://mendel.berkeley.edu/~frauwirt/HomePage/ |_) | () |\ (_ | \|
DNRC Title: Chairman of Joint Commission on In-duh-vidual Affairs
