T cell epitope prediction

[Jan Hansen]

Michael Bunce wrote:
> 
> Does anyone know where I can find some online algorithms to map out possible T
> cell epitopes from a primary sequence?  I have found Epiplot, but would like
> to get hold of TSites and some other programs that are mentioned in the
> literature.
> 
> Thanks in advance,
> 
> Mike Bunce
> AVSG
> Lincoln University
> New Zealand
> Email:  Bunce at lincoln.ac.nz
Please see: 

Parker tool http://www-bimas.dcrt.nih.gov/molbio/hla_bind/index.html
epimatrix tool http://www.epimatrix.com/hiv 


-- 
Jan Hansen

Center for Biological Sequence Analysis
Department of Physical Chemistry
The Technical University of Denmark
Building 206
DK-2800 Lyngby
Denmark

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E-mail: janhan at cbs.dtu.dk
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