From raymond at caltech.edu Wed Jul 13 19:42:17 2005 From: raymond at caltech.edu (Raymond Lee) Date: Thu Jul 14 03:23:26 2005 Subject: [Acedb-soft] run acedb on EM64T Message-ID: <42D5B4E9.90003@caltech.edu> Hi, i'm trying to run acedb on my Xeon machine that runs Redhat Enterprise x86_64 uname gives : Linux iching.caltech.edu 2.6.9-11.ELsmp #1 SMP Fri May 20 18:25:30 EDT 2005 x86_64 x86_64 x86_64 GNU/Linux i failed to run successfully either the static or dynamic 4.9.27/29 (non-server) binaries due to missing libraries, e.g. running static binary 4.9.29 gives: ./xace: error while loading shared libraries: libncurses.so.5: cannot open shared object file: No such file or directory but i do have that file here /usr/lib64/libncurses.so.5 any solutions? thanks. raymond From didoka at abv.bg Thu Jul 14 05:18:05 2005 From: didoka at abv.bg (=?windows-1251?B?5OX/7SDv5en35eI=?=) Date: Fri Jul 15 03:07:22 2005 Subject: [Acedb-soft] Acedb error Message-ID: <511738404.1121336285725.JavaMail.nobody@app4.ni.bg> Hi, I am student from Bulgaria and i have downloaded Windows version of Acedb, but application returns an error when i try to export larger sets of data, because of insufficient memory i think. The error message is: > ********************************* > FATAL ERROR > program: > xace, version: ACEDB 4_9u, file: > bstools.c line: 80) - > Memory allocation failure when acedb requested 301989888 bytes, > acedb has already allocated 830304456 bytes. > ********************************* I wish to download Linux version of Acedb. Tell me please -where can i find latest version for Linux, and whether if i try to run Linux-based application of Acedb this error will not appear again? ----------------------------------------------------------------- From morten at untamo.net Fri Jul 15 10:14:05 2005 From: morten at untamo.net (Morten Hulden) Date: Sun Jul 17 02:18:41 2005 Subject: [Acedb-soft] run acedb on EM64T In-Reply-To: <42D5B4E9.90003@caltech.edu> References: <42D5B4E9.90003@caltech.edu> Message-ID: <42D7D2BD.9020508@untamo.net> Raymond Lee wrote: > Hi, > > i'm trying to run acedb on my Xeon machine that runs Redhat Enterprise > x86_64 > > uname gives : Linux iching.caltech.edu 2.6.9-11.ELsmp #1 SMP Fri May 20 > 18:25:30 EDT 2005 x86_64 x86_64 x86_64 GNU/Linux > > i failed to run successfully either the static or dynamic 4.9.27/29 > (non-server) binaries due to missing libraries, e.g. running static > binary 4.9.29 gives: > > ./xace: error while loading shared libraries: libncurses.so.5: cannot > open shared object file: No such file or directory > > but i do have that file here > /usr/lib64/libncurses.so.5 Is /usr/lib64 defined in /etc/ld.so.conf? Does running ldconfig help? Is /usr/lib64/libncurses.so.5 a symlink and does the real file (e.g. libncurses.so.5.4) exist? From raymond at caltech.edu Tue Jul 19 16:09:46 2005 From: raymond at caltech.edu (Raymond Lee) Date: Wed Jul 20 03:05:46 2005 Subject: [Acedb-soft] run acedb on EM64T In-Reply-To: <42D7D2BD.9020508@untamo.net> References: <42D5B4E9.90003@caltech.edu> <42D7D2BD.9020508@untamo.net> Message-ID: <42DD6C1A.5070607@caltech.edu> Hi Morten, just to follow up. the problem for acedb binaries is solved after i re-installed the entire RHE4 package. i previously left out some things that i thought my machine 'obviously' did not need. still puzzled about why the problem in the first place. thanks for your help anyway. raymond Morten Hulden wrote: > Raymond Lee wrote: > >> Hi, >> >> i'm trying to run acedb on my Xeon machine that runs Redhat Enterprise >> x86_64 >> >> uname gives : Linux iching.caltech.edu 2.6.9-11.ELsmp #1 SMP Fri May >> 20 18:25:30 EDT 2005 x86_64 x86_64 x86_64 GNU/Linux >> >> i failed to run successfully either the static or dynamic 4.9.27/29 >> (non-server) binaries due to missing libraries, e.g. running static >> binary 4.9.29 gives: >> >> ./xace: error while loading shared libraries: libncurses.so.5: cannot >> open shared object file: No such file or directory >> >> but i do have that file here >> /usr/lib64/libncurses.so.5 > > > Is /usr/lib64 defined in /etc/ld.so.conf? > Does running ldconfig help? > Is /usr/lib64/libncurses.so.5 a symlink and does the real file (e.g. > libncurses.so.5.4) exist? > > -- __ Raymond Lee raymond@caltech.edu http://www.WormBase.org/ California Institute of Technology Division of Biology 156-29 Pasadena, CA 91125 USA tel: 626.395.2687 fax: 626.395.8611 From timc at chiark.greenend.org.uk Thu Jul 21 08:34:23 2005 From: timc at chiark.greenend.org.uk (Tim Cutts) Date: Thu Jul 21 08:59:59 2005 Subject: [Acedb-soft] run acedb on EM64T References: <42D5B4E9.90003@caltech.edu> <42D7D2BD.9020508@untamo.net> Message-ID: In article , Raymond Lee wrote: >Hi Morten, > >just to follow up. > >the problem for acedb binaries is solved after i re-installed the entire >RHE4 package. i previously left out some things that i thought my >machine 'obviously' did not need. still puzzled about why the problem in >the first place. I suspect that what you download from Sanger is a 32-bit binary. 32-bit binaries cannot use 64-bit libraries, and vice-versa. Your Red Hat system was missing the 32-bit version of libncurses.so.5 Tim