New Arabidopsis DNA 27-Dec-1997
AtDB Project
arabidopsis-seq at genome.Stanford.EDU
Sat Dec 27 15:54:06 EST 1997
====================== New DNA Sequences =======================
AC003952 AC003952 83131bp DNA PLN 24-DEC-1997
Arabidopsis thaliana BAC T13L16 from chromosome IV, top arm, complete
sequence.
HTG; T13L16.1; putative nuclear protein; T13L16.2; hypothetical protein;
T13L16.3; putative serine proteinase; T13L16.4; T13L16.5; T13L16.6;
putative zinc-finger protein; T13L16.7; putative Tal-1-like reverse
transcriptase; T13L16.8; putative Bop-like zinc-finger protein;
T13L16.9; putative calcium-dependent ser/thr protein kinase; T13L16.10;
putative DnaJ-like chaperonin; T13L16.11; putative glycine-rich,
zinc-finger DNA-binding protein; T13L16.12; putative thaumatin-like
pathogenesis-related protein; T13L16.13; putative senescence-assoc.
rhodanese-like protein; T13L16.14; putative physical impedence protein;
T13L16.15; T13L16.16; putative histidine kinase; tRNA-Ile.
AF036618 AF036618 2382bp mRNA PLN 24-DEC-1997
Arabidopsis thaliana acetyl-CoA synthetase mRNA, complete cds.
acetyl-CoA synthetase.
AF037362 AF037362 1807bp mRNA PLN 25-DEC-1997
Arabidopsis thaliana ATA20 mRNA, complete cds.
ATA20.
AF037442 AF037442 1966bp mRNA PLN 21-DEC-1997
Arabidopsis thaliana histone acetyltransferase (HAT1) mRNA, complete cds.
HAT1; histone acetyltransferase.
AF038557 AF038557 2846bp mRNA PLN 23-DEC-1997
Arabidopsis thaliana ligand gated channel-like protein mRNA, complete
cds.
ligand gated channel-like protein.
D89824 D89824 882bp mRNA PLN 26-DEC-1997
Arabidopsis thaliana AtRab mRNA for GTP-binding protein, complete cds.
AtRab; GTP-binding protein.
==================== Updated DNA Sequences =====================
AB004796 AB004796 1352bp mRNA PLN 26-DEC-1997
Arabidopsis thaliana mRNA for mitogen activated protein kinase kinase,
complete cds.
mitogen activated protein kinase kinase; nMAPKK.
AC002423 AC002423 97180bp DNA HTG 26-DEC-1997
*** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
BAC T23E23; HTGS phase 1, 6 unordered pieces.
HTG; HTGS_PHASE1.
AC003105 AC003105 95160bp DNA HTG 24-DEC-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F18A8'
genomic sequence near marker 'B68'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC003674 AC003674 41270bp DNA HTG 23-DEC-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17A14'
genomic sequence near marker 'CIC10A06'; HTGS phase 1, 2 unordered
pieces.
HTG; HTGS_PHASE1.
ATAC003033 AC003033 96801bp DNA PLN 19-DEC-1997
Arabidopsis thaliana chromosome II BAC T21L14 genomic sequence, complete
sequence.
HTG; T21L14.1; putative disease resistance protein (Cf-2.2), 3' partial;
T21L14.2; mitochondrial F1-ATPase, gamma subunit; T21L14.3; similar to
disease resistance protein (Cf-2.2); T21L14.4; putative disease
resistance protein (Cf-2.2); T21L14.5; T21L14.6; T21L14.7; putative
cellulase; T21L14.8; T21L14.9; T21L14.10; T21L14.11; photomorphogenesis
repressor COP1; T21L14.12; Argonaute (AGO1)-like protein; T21L14.13;
T21L14.14; putative protein disulfide isomerase precursor; T21L14.15;
carrot B2 protein-like; T21L14.16; T21L14.17; T21L14.18; T21L14.19;
T21L14.20; putative beta-glucosidase; T21L14.21; putative cyclin
g-associated kinase; T21L14.22; T21L14.23; putative phosphate
transporter.
ATORPC X97323 1340bp RNA PLN 19-DEC-1997
A.thaliana mRNA for outward rectifying potassium channel KCO1.
outward rectifying potassium channel KCO1.
U79557 U79557 2690bp mRNA PLN 24-DEC-1997
Arabidopsis thaliana IAA24 (IAA24) mRNA, partial cds.
IAA24.
=========== Updated Sequence Features/Annotations =============
ATCYC07 AJ001342 906bp RNA PLN 22-DEC-1997
Arabidopsis thaliana mRNA for S-phase-specific ribosomal protein.
cyc07; ribosomal protein; S-phase-specific protein; Putative
S-phase-specific ribosomal protein.
ATNADPT X96536 8130bp DNA PLN 19-DEC-1997
A.thaliana mitochondrial tRNA-Tyr pseudogene & nad2 gene, exon 3,4 & 5.
tyrosine; nad2 gene; NADH-ubiquinone oxidoreductase; Tyr-tRNA gene;
tyr-tRNA; tRNA-Tyr; nad2.
ATRABGDI2 AJ001397 1684bp RNA PLN 22-DEC-1997
Arabidopsis thaliana mRNA for rab GDP dissociation inhibitor, isoform 2.
GDI2 gene; GDP dissociation inhibitor; rab-GDI gene; GDI2.
ATRPSNAD X96535 4784bp DNA PLN 19-DEC-1997
A.thaliana mitochondrial rps4 gene & nad2 gene, exon 1 & 2 and joining
features.
small; nad2 gene; NADH-ubiquinone oxidoreductase; rps4 gene; rps4; small
ribosomal protein 4; nad2.
ATUDGE Z54214 1356bp RNA PLN 22-DEC-1997
A.thaliana mRNA for uridine diphosphate glucose epimerase.
uridine diphosphate glucose epimerase.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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