New Arabidopsis DNA 15-Nov-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sat Nov 15 14:15:19 EST 1997


====================== New DNA Sequences =======================

AB008264    AB008264    79976bp    DNA      PLN      13-NOV-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBD2, complete
     sequence.
    HTG.

AB008265    AB008265    81662bp    DNA      PLN      13-NOV-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MDC12, complete
     sequence.
    HTG.

AB008266    AB008266    48622bp    DNA      PLN      13-NOV-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MHJ24, complete
     sequence.
    HTG.

AB008268    AB008268    83594bp    DNA      PLN      13-NOV-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSJ1, complete
     sequence.
    HTG.

AB008269    AB008269    61634bp    DNA      PLN      13-NOV-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSL3, complete
     sequence.
    HTG.

AB008270    AB008270    50641bp    DNA      PLN      13-NOV-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTG13, complete
     sequence.
    HTG.

AB008271    AB008271    79073bp    DNA      PLN      13-NOV-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUK11, complete
     sequence.
    HTG.

AC003096    AC003096    86050bp    DNA      HTG      07-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29F13'
     genomic sequence near marker 've016'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AF026275    AF026275     1007bp    mRNA     PLN      12-NOV-1997
    Arabidopsis thaliana beta-tonoplast intrinsic protein (beta-TIP) mRNA,
     complete cds.
    beta-TIP; beta-tonoplast intrinsic protein.

AF027157    AF027157     1341bp    DNA      PLN      10-NOV-1997
    Arabidopsis thaliana auxin-responsive protein IAA2 gene, complete cds.
    IAA2; auxin-responsive protein IAA2.

AF028711    AF028711     1815bp    mRNA     PLN      10-NOV-1997
    Arabidopsis thaliana WD-40 repeat protein MSI4 (MSI4) mRNA, complete cds.
    MSI4; WD-40 repeat protein MSI4.

AF032879    AF032879     1013bp    mRNA     PLN      12-NOV-1997
    Arabidopsis thaliana protein phosphatase U (PPU) mRNA, partial cds.
    PPU; protein phosphatase U.

ATAHP1      AJ222585     1867bp    RNA      PLN      08-NOV-1997
    Arabidopsis thaliana mRNA for AT-hook protein 1.
    AHP1 gene; AT-hook protein 1; AHP1.

ATAJ2532    AJ002532     5299bp    DNA      PLN      04-NOV-1997
    Arabidopsis thaliana ADPG1 gene.
    ADPG1 gene; endo-polygalacturonase; ADPG1.

ATCHIV      Y14590     2381bp    DNA      PLN      03-NOV-1997
    Arabidopsis thaliana CHIV gene.
    chitinase; chiV gene; class IV; CHIV; class IV chitinase.

ATFERRCHI   Y13382     4304bp    DNA      PLN      03-NOV-1997
    Arabidopsis thaliana ferrochelatase-I gene and promoter sequence.
    ferrochelatase-I; promoter.

ATJ001148   AJ001148     3387bp    DNA      PLN      06-NOV-1997
    Arabidopsis thaliana CBL1 gene.
    cbl gene; CBL1.

ATY15362    Y15362     1880bp    RNA      PLN      05-NOV-1997
    Arabidopsis thaliana mRNA for sigma factor.
    sigA gene; sigma factor; sigA.

==================== Updated DNA Sequences =====================

ATRAB11     Y08904     1200bp    RNA      PLN      07-NOV-1997
    A.thaliana mRNA for Rab11 protein.
    GTP-binding protein; rab11 gene; Rab11 protein; rab11.

=========== Updated Sequence Features/Annotations  =============

AB000796    AB000796     2155bp    mRNA     PLN      22-AUG-1997
    Arabidopsis thaliana mRNA for NPK1-related protein kinase 1L, partial
     cds.
    ANP1; NPK1-related protein kinase 1L.

AB000797    AB000797     2073bp    mRNA     PLN      22-AUG-1997
    Arabidopsis thaliana mRNA for NPK1-related protein kinase 1S, complete
     cds.
    ANP1; NPK1-related protein kinase 1S.

AB000798    AB000798     2193bp    mRNA     PLN      22-AUG-1997
    Arabidopsis thaliana mRNA for NPK1-related protein kinase 2, partial cds.
    ANP2; NPK1-related protein kinase 2.

AB000799    AB000799     2157bp    mRNA     PLN      22-AUG-1997
    Arabidopsis thaliana mRNA for NPK1-related protein kinase 3, complete
     cds.
    ANP3; NPK1-related protein kinase 3.

ATAC002387  AC002387   122928bp    DNA      PLN      03-NOV-1997
    Arabidopsis thaliana chromosome II BAC F4L23 genomic sequence, complete
     sequence.
    HTG; F4L23.1; F4L23.2; putative surface protein; F4L23.3; F4L23.4;
     F4L23.5; putative dihydrodipicolinate synthase; F4L23.6; putative
     PD1-like DNA-binding protein; F4L23.7; F4L23.8; F4L23.9; putative
     dihydroflavonol 4-reductase; F4L23.10; tRNA-Lys; F4L23.11; F4L23.12;
     F4L23.13; F4L23.14; F4L23.15; putative receptor-like protein kinase;
     F4L23.16; putative phosphotransferase; F4L23.17; F4L23.18; putative
     nucleotide sugar epimerase; F4L23.19; 5-enolpyruvylshikimate-3-phosphate
     synthase (EPSP); F4L23.20; putative transketolase precursor; F4L23.21;
     putative DNA repair protein (RAD57); F4L23.22; putative
     sialoglycoprotease; F4L23.23; F4L23.24; F4L23.25; putative methionine
     aminopeptidase; F4L23.26; putative reverse transcriptase; F4L23.27;
     putative pectinesterase; F4L23.28; F4L23.29; F4L23.30; F4L23.31;
     putative proline-rich protein; F4L23.32; similar to symbiosis-related
     protein, 5' partial.

ATACOAC     Y09061     6605bp    DNA      PLN      05-NOV-1997
    A.thaliana gene encoding acetyl-CoA carboxylase, biotin subunit.
    acetyl-CoA carboxylase; biotin carboxylase; acetyl-CoA carboxylase,
     biotin carboxylase subunit.

ATDNAJLIK   Y11969     1580bp    RNA      PLN      05-NOV-1997
    A.thaliana mRNA for dnaJ-like protein.
    dnaJ-like protein; J10 gene; J10.

ATKASIIIG   Y11689     2640bp    DNA      PLN      06-NOV-1997
    A.thaliana KAS III gene.
    3-ketoacyl-acyl carrier protein synthase III; KAS III gene; KAS III.

ATRABGDI2   AJ001397     1684bp    RNA      PLN      05-NOV-1997
    Arabidopsis thaliana mRNA for rab GDP dissociation inhibitor, isoform 2.
    GDI2 gene; GDP dissociation inhibitor; rab-GDI gene; GDI2.

ATSQUSYN    X86692     1599bp    RNA      PLN      08-NOV-1997
    A.thaliana mRNA for squalene synthase.
    farnesyl-diphosphate farnesyltransferase; squalene synthase.

ATUDGE      Z54214     1356bp    RNA      PLN      06-NOV-1997
    A.thaliana mRNA for uridine diphosphate glucose epimerase.
    uridine diphosphate glucose epimerase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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