New Arabidopsis DNA 12-Dec-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Dec 14 12:27:12 EST 1998


====================== New DNA Sequences =======================

AB020742    AB020742    74342bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K21H1; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020743    AB020743    11211bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K22J17; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020744    AB020744    62052bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K9E15; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020745    AB020745    74298bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MJE7; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020746    AB020746    79706bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 3, P1 clone: MOB24; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020747    AB020747    29605bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MPI10; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020748    AB020748     3544bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MPK23; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020749    AB020749    76816bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 3, P1 clone: MRC8; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020750    AB020750     3007bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MRD20; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020751    AB020751    55151bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MRG21; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020752    AB020752    68098bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MTH16; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020753    AB020753    11026bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MWP19; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020754    AB020754    54528bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MYN8; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB020755    AB020755    81672bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MZN1; HTGS phase 2.
    HTG; HTGS_PHASE2.

AC006135    AC006135   140228bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F24H14'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 18 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC006136    AC006136    91497bp    DNA      HTG      05-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T13H18'
     genomic sequence near marker 'GPC6'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC006161    AC006161   106652bp    DNA      HTG      08-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T14A4'
     genomic sequence near marker 'mi310'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC006192    AC006192    91780bp    DNA      PLN      09-DEC-1998
    Arabidopsis thaliana BAC T24G3 from chromosome V near 70 cM, complete
     sequence.
    HTG.

AC006193    AC006193   118871bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     F13O11 genomic sequence; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC006194    AC006194    94647bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17A11'
     genomic sequence near marker 'GPC6'; HTGS phase 1, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC006200    AC006200   106555bp    DNA      HTG      10-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F10A8'
     genomic sequence near marker 'rga'; HTGS phase 1, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC006201    AC006201    93684bp    DNA      HTG      10-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27K22'
     genomic sequence near marker 'c245'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006202    AC006202    83100bp    DNA      HTG      10-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3B23'
     genomic sequence near marker 'mi54'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AF070937    AF070937     1083bp    mRNA     PLN      09-DEC-1998
    Arabidopsis thaliana gibberellin 3 beta-hydroxylase (GA4H) mRNA, complete
     cds.
    GA4H; gibberellin 3 beta-hydroxylase.

AF073875    AF073875     2873bp    DNA      PLN      06-DEC-1998
    Arabidopsis thaliana endo-1,4-beta-D-glucanase KORRIGAN (KOR) gene, KOR-1
     allele, complete cds.
    KOR; endo-1,4-beta-D-glucanase KORRIGAN.

AF097648    AF097648     1478bp    mRNA     PLN      09-DEC-1998
    Arabidopsis thaliana phosphate/triose-phosphate translocator precursor,
     mRNA, nuclear gene encoding chloroplast protein, complete cds.
    phosphate/triose-phosphate translocator precursor.

AF101075    AF101075     1350bp    mRNA     PLN      09-DEC-1998
    Arabidopsis thaliana sigma-like factor (SIG4) mRNA, complete cds.
    SIG4; sigma-like factor.

ATAJ2551    AJ002551     2171bp    mRNA     PLN      02-DEC-1998
    Arabidopsis thaliana mRNA for heat shock protein 70.
    heat shock protein 70; hsp70 gene; hsp70.

ATH010947   AJ010947     1543bp    DNA      PLN      02-DEC-1998
    Arabidopsis thaliana hsp81.1 gene promoter.
    heat shock protein; hsp81.1 gene; promoter; hsp81.1.

ATH6053     AJ006053      580bp    mRNA     PLN      07-DEC-1998
    Arabidopsis thaliana mRNA for peroxisomal membrane protein.
    peroxisomal membrane protein; pmp22.

==================== Updated DNA Sequences =====================

AC005896    AC005896   119001bp    DNA      HTG      10-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3G5'
     genomic sequence near marker 've018'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005898    AC005898    67088bp    DNA      HTG      07-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6C20'
     genomic sequence near marker 'g4532'; HTGS phase 1, 10 unordered pieces.
    HTG; HTGS_PHASE1.

AC005956    AC005956    99687bp    DNA      HTG      04-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'MITSUI' P1 'MHK10'
     genomic sequence near marker 'EG05C12'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005957    AC005957   114041bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T15J14'
     genomic sequence near marker 'mi398'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005967    AC005967    96046bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27D4'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005970    AC005970   121160bp    DNA      HTG      08-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6P5'
     genomic sequence near marker 'mi310'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC006053    AC006053   109092bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3N11'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006067    AC006067   133070bp    DNA      HTG      09-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T13P21'
     genomic sequence near marker 'mi398'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC004561  AC004561   131743bp    DNA      PLN      08-DEC-1998
    Arabidopsis thaliana chromosome II BAC F16P2 genomic sequence, complete
     sequence.
    HTG; F16P2.1; F16P2.2; F16P2.3; F16P2.4; putative RNA binding protein;
     F16P2.5; putative cyclin, PCNA; F16P2.6; putative enolase; F16P2.7;
     tubulin beta-7 chain; F16P2.8; RNA polymerase I(A) and III(C) 14 kDa
     subunit (AtRPAC14) identical to GB:U35049; F16P2.9; F16P2.10; tRNA-Val;
     F16P2.11; F16P2.12; putative 18 kDa class I heat shock protein;
     F16P2.13; putative glutathione S-transferase; F16P2.14; F16P2.15;
     F16P2.16; F16P2.17; glutathione S-transferase; F16P2.18; F16P2.19;
     F16P2.20; F16P2.21; putative zinc transporter; F16P2.22; phosphoprotein
     phosphatase-type 1 catalytic subunit; F16P2.23; putative C-4 sterol
     methyl oxidase; F16P2.24; putative protein phosphatase 2C; F16P2.25;
     putative tropinone reductase; F16P2.26; F16P2.27; F16P2.28; F16P2.29;
     F16P2.30; F16P2.31; F16P2.32; F16P2.33; F16P2.34; F16P2.35; F16P2.36;
     F16P2.37; putative receptor-like protein kinase; F16P2.38; F16P2.39;
     similar to maize transposon MuDR mudrA protein; F16P2.40; F16P2.41;
     putative proline-rich protein; F16P2.42; pumilio-like protein; F16P2.43;
     F16P2.44; F16P2.45; F16P2.46; F16P2.47; F16P2.48.

ATLBAAP3    X77499     1867bp    mRNA     PLN      03-DEC-1998
    Arabadopsis thaliana Candbergis AAP3 mRNA.
    amino acid permease; AAP3.

=========== Updated Sequence Features/Annotations  =============

AF040102    AF040102     2924bp    mRNA     PLN      09-DEC-1998
    Arabidopsis thaliana p105 mRNA, complete cds.
    p105.

AF079800    AF079800      765bp    mRNA     PLN      11-DEC-1998
    Arabidopsis thaliana PsbY precursor (psbY) mRNA, nuclear gene encoding
     chloroplast protein, complete cds.
    psbY; PsbY precursor; PsbY-A1; PsbY-A2.

ATDRT100    X66482 S43965     1360bp    mRNA     PLN      04-DEC-1998
    A.thaliana mRNA DRT 100.
    recombination protein; DRT 100; putative.

ATFCA7      Z97342   206817bp    DNA      PLN      04-DEC-1998
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 7.
    gibberellin oxidase homolog; DNA-binding homeotic protein Athb-2;
     enoyl-CoA hydratase; hypothetical protein; triacylglycerol lipase
     homolog; nuclear antigen homolog; resistance gene; resistance gene
     homolog; resistance gene homolog (fragment); protein kinase homolog;
     transcription factor homolog; allergen homolog; Clp proteinase homolog;
     Beta-Amylase; serine protease homolog.

ATH11GENE   X62458     3000bp    DNA      PLN      04-DEC-1998
    A.thaliana gene for histone H1-1.
    histone; histone H1-1; Histone H1; H1-1flk.

ATHPOL1     D12841      246bp    DNA      PLN      08-DEC-1998
    Arabidopsis thaliana Ty1-copia type retrotransposon pol gene for reverse
     transcriptase, partial cds.
    retrotransposon; reverse transcriptase; pol.

ATHPOL2     D12842      243bp    DNA      PLN      08-DEC-1998
    Arabidopsis thaliana Ty1-copia type retrotransposon pol gene for reverse
     transcriptase, partial cds.
    retrotransposon; reverse transcriptase; pol.

ATHPOL3     D12843      246bp    DNA      PLN      08-DEC-1998
    Arabidopsis thaliana Ty1-copia type retrotransposon pol gene for reverse
     transcriptase, partial cds.
    retrotransposon; reverse transcriptase; pol.

ATLBAAP4    X77500     1619bp    mRNA     PLN      03-DEC-1998
    Arabadopsis thaliana Landsberg AAP4 mRNA.
    amino acid transporter; AAP4.

ATLBAAP5    X77501     1832bp    mRNA     PLN      03-DEC-1998
    Arabadopsis thaliana Landsberg AAP5 mRNA.
    amino acid permease; AAP5.

ATLBNT1     X77503     1924bp    mRNA     PLN      03-DEC-1998
    Arabadopsis thaliana Landsberg NT1 mRNA.
    oligopeptide transporter 1-1; OPT1-1 gene; OPT1-1.

MTATORFX    X72616     1331bp    DNA      PLN      04-DEC-1998
    A.thaliana mitochondrion gene rp12 (last exon) and OrfX.
    RNA; conserved sequence; group II intron; orfX; ribosomal protein; rp12.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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