New Arabidopsis DNA 12-Dec-1998
AtDB Project
arabidopsis-seq at genome.stanford.edu
Mon Dec 14 12:27:12 EST 1998
====================== New DNA Sequences =======================
AB020742 AB020742 74342bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone: K21H1; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020743 AB020743 11211bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone: K22J17; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020744 AB020744 62052bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone: K9E15; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020745 AB020745 74298bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MJE7; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020746 AB020746 79706bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MOB24; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020747 AB020747 29605bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MPI10; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020748 AB020748 3544bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MPK23; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020749 AB020749 76816bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MRC8; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020750 AB020750 3007bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MRD20; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020751 AB020751 55151bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MRG21; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020752 AB020752 68098bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MTH16; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020753 AB020753 11026bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MWP19; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020754 AB020754 54528bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MYN8; HTGS phase 2.
HTG; HTGS_PHASE2.
AB020755 AB020755 81672bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MZN1; HTGS phase 2.
HTG; HTGS_PHASE2.
AC006135 AC006135 140228bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F24H14'
genomic sequence near marker 'CIC06E08'; HTGS phase 1, 18 unordered
pieces.
HTG; HTGS_PHASE1.
AC006136 AC006136 91497bp DNA HTG 05-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T13H18'
genomic sequence near marker 'GPC6'; HTGS phase 1, 6 unordered pieces.
HTG; HTGS_PHASE1.
AC006161 AC006161 106652bp DNA HTG 08-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T14A4'
genomic sequence near marker 'mi310'; HTGS phase 1, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC006192 AC006192 91780bp DNA PLN 09-DEC-1998
Arabidopsis thaliana BAC T24G3 from chromosome V near 70 cM, complete
sequence.
HTG.
AC006193 AC006193 118871bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
F13O11 genomic sequence; HTGS phase 1, 6 unordered pieces.
HTG; HTGS_PHASE1.
AC006194 AC006194 94647bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17A11'
genomic sequence near marker 'GPC6'; HTGS phase 1, 7 unordered pieces.
HTG; HTGS_PHASE1.
AC006200 AC006200 106555bp DNA HTG 10-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F10A8'
genomic sequence near marker 'rga'; HTGS phase 1, 7 unordered pieces.
HTG; HTGS_PHASE1.
AC006201 AC006201 93684bp DNA HTG 10-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27K22'
genomic sequence near marker 'c245'; HTGS phase 1, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC006202 AC006202 83100bp DNA HTG 10-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3B23'
genomic sequence near marker 'mi54'; HTGS phase 1, 5 unordered pieces.
HTG; HTGS_PHASE1.
AF070937 AF070937 1083bp mRNA PLN 09-DEC-1998
Arabidopsis thaliana gibberellin 3 beta-hydroxylase (GA4H) mRNA, complete
cds.
GA4H; gibberellin 3 beta-hydroxylase.
AF073875 AF073875 2873bp DNA PLN 06-DEC-1998
Arabidopsis thaliana endo-1,4-beta-D-glucanase KORRIGAN (KOR) gene, KOR-1
allele, complete cds.
KOR; endo-1,4-beta-D-glucanase KORRIGAN.
AF097648 AF097648 1478bp mRNA PLN 09-DEC-1998
Arabidopsis thaliana phosphate/triose-phosphate translocator precursor,
mRNA, nuclear gene encoding chloroplast protein, complete cds.
phosphate/triose-phosphate translocator precursor.
AF101075 AF101075 1350bp mRNA PLN 09-DEC-1998
Arabidopsis thaliana sigma-like factor (SIG4) mRNA, complete cds.
SIG4; sigma-like factor.
ATAJ2551 AJ002551 2171bp mRNA PLN 02-DEC-1998
Arabidopsis thaliana mRNA for heat shock protein 70.
heat shock protein 70; hsp70 gene; hsp70.
ATH010947 AJ010947 1543bp DNA PLN 02-DEC-1998
Arabidopsis thaliana hsp81.1 gene promoter.
heat shock protein; hsp81.1 gene; promoter; hsp81.1.
ATH6053 AJ006053 580bp mRNA PLN 07-DEC-1998
Arabidopsis thaliana mRNA for peroxisomal membrane protein.
peroxisomal membrane protein; pmp22.
==================== Updated DNA Sequences =====================
AC005896 AC005896 119001bp DNA HTG 10-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3G5'
genomic sequence near marker 've018'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005898 AC005898 67088bp DNA HTG 07-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6C20'
genomic sequence near marker 'g4532'; HTGS phase 1, 10 unordered pieces.
HTG; HTGS_PHASE1.
AC005956 AC005956 99687bp DNA HTG 04-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'MITSUI' P1 'MHK10'
genomic sequence near marker 'EG05C12'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005957 AC005957 114041bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T15J14'
genomic sequence near marker 'mi398'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005967 AC005967 96046bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27D4'
genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005970 AC005970 121160bp DNA HTG 08-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6P5'
genomic sequence near marker 'mi310'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC006053 AC006053 109092bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3N11'
genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC006067 AC006067 133070bp DNA HTG 09-DEC-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T13P21'
genomic sequence near marker 'mi398'; HTGS phase 1, 3 unordered pieces.
HTG; HTGS_PHASE1.
ATAC004561 AC004561 131743bp DNA PLN 08-DEC-1998
Arabidopsis thaliana chromosome II BAC F16P2 genomic sequence, complete
sequence.
HTG; F16P2.1; F16P2.2; F16P2.3; F16P2.4; putative RNA binding protein;
F16P2.5; putative cyclin, PCNA; F16P2.6; putative enolase; F16P2.7;
tubulin beta-7 chain; F16P2.8; RNA polymerase I(A) and III(C) 14 kDa
subunit (AtRPAC14) identical to GB:U35049; F16P2.9; F16P2.10; tRNA-Val;
F16P2.11; F16P2.12; putative 18 kDa class I heat shock protein;
F16P2.13; putative glutathione S-transferase; F16P2.14; F16P2.15;
F16P2.16; F16P2.17; glutathione S-transferase; F16P2.18; F16P2.19;
F16P2.20; F16P2.21; putative zinc transporter; F16P2.22; phosphoprotein
phosphatase-type 1 catalytic subunit; F16P2.23; putative C-4 sterol
methyl oxidase; F16P2.24; putative protein phosphatase 2C; F16P2.25;
putative tropinone reductase; F16P2.26; F16P2.27; F16P2.28; F16P2.29;
F16P2.30; F16P2.31; F16P2.32; F16P2.33; F16P2.34; F16P2.35; F16P2.36;
F16P2.37; putative receptor-like protein kinase; F16P2.38; F16P2.39;
similar to maize transposon MuDR mudrA protein; F16P2.40; F16P2.41;
putative proline-rich protein; F16P2.42; pumilio-like protein; F16P2.43;
F16P2.44; F16P2.45; F16P2.46; F16P2.47; F16P2.48.
ATLBAAP3 X77499 1867bp mRNA PLN 03-DEC-1998
Arabadopsis thaliana Candbergis AAP3 mRNA.
amino acid permease; AAP3.
=========== Updated Sequence Features/Annotations =============
AF040102 AF040102 2924bp mRNA PLN 09-DEC-1998
Arabidopsis thaliana p105 mRNA, complete cds.
p105.
AF079800 AF079800 765bp mRNA PLN 11-DEC-1998
Arabidopsis thaliana PsbY precursor (psbY) mRNA, nuclear gene encoding
chloroplast protein, complete cds.
psbY; PsbY precursor; PsbY-A1; PsbY-A2.
ATDRT100 X66482 S43965 1360bp mRNA PLN 04-DEC-1998
A.thaliana mRNA DRT 100.
recombination protein; DRT 100; putative.
ATFCA7 Z97342 206817bp DNA PLN 04-DEC-1998
Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 7.
gibberellin oxidase homolog; DNA-binding homeotic protein Athb-2;
enoyl-CoA hydratase; hypothetical protein; triacylglycerol lipase
homolog; nuclear antigen homolog; resistance gene; resistance gene
homolog; resistance gene homolog (fragment); protein kinase homolog;
transcription factor homolog; allergen homolog; Clp proteinase homolog;
Beta-Amylase; serine protease homolog.
ATH11GENE X62458 3000bp DNA PLN 04-DEC-1998
A.thaliana gene for histone H1-1.
histone; histone H1-1; Histone H1; H1-1flk.
ATHPOL1 D12841 246bp DNA PLN 08-DEC-1998
Arabidopsis thaliana Ty1-copia type retrotransposon pol gene for reverse
transcriptase, partial cds.
retrotransposon; reverse transcriptase; pol.
ATHPOL2 D12842 243bp DNA PLN 08-DEC-1998
Arabidopsis thaliana Ty1-copia type retrotransposon pol gene for reverse
transcriptase, partial cds.
retrotransposon; reverse transcriptase; pol.
ATHPOL3 D12843 246bp DNA PLN 08-DEC-1998
Arabidopsis thaliana Ty1-copia type retrotransposon pol gene for reverse
transcriptase, partial cds.
retrotransposon; reverse transcriptase; pol.
ATLBAAP4 X77500 1619bp mRNA PLN 03-DEC-1998
Arabadopsis thaliana Landsberg AAP4 mRNA.
amino acid transporter; AAP4.
ATLBAAP5 X77501 1832bp mRNA PLN 03-DEC-1998
Arabadopsis thaliana Landsberg AAP5 mRNA.
amino acid permease; AAP5.
ATLBNT1 X77503 1924bp mRNA PLN 03-DEC-1998
Arabadopsis thaliana Landsberg NT1 mRNA.
oligopeptide transporter 1-1; OPT1-1 gene; OPT1-1.
MTATORFX X72616 1331bp DNA PLN 04-DEC-1998
A.thaliana mitochondrion gene rp12 (last exon) and OrfX.
RNA; conserved sequence; group II intron; orfX; ribosomal protein; rp12.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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