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New Arabidopsis DNA 05-Sep-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Sep 5 11:48:05 EST 1998


====================== New DNA Sequences =======================

AB017059    AB017059    19971bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K13P22,
     complete sequence.
    HTG.

AB017060    AB017060    54252bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K18J17,
     complete sequence.
    HTG.

AB017061    AB017061    61712bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19E20,
     complete sequence.
    HTG.

AB017062    AB017062    30578bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K21I16,
     complete sequence.
    HTG.

AB017063    AB017063    68726bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K3K7, complete
     sequence.
    HTG.

AB017064    AB017064    83373bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MDN11, complete
     sequence.
    HTG.

AB017065    AB017065    61290bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MFC16, complete
     sequence.
    HTG.

AB017066    AB017066    61380bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MGN6, complete
     sequence.
    HTG.

AB017067    AB017067    83689bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJC20, complete
     sequence.
    HTG.

AB017068    AB017068    86121bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJG14, complete
     sequence.
    HTG.

AB017069    AB017069    88128bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MNJ8, complete
     sequence.
    HTG.

AB017070    AB017070    45911bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MNL12, complete
     sequence.
    HTG.

AB017071    AB017071    81370bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSJ11, complete
     sequence.
    HTG.

AC005560    AC005560   110388bp    DNA      HTG      01-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F2I9'
     genomic sequence near marker 'rga'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005561    AC005561   102276bp    DNA      HTG      29-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9F8'
     genomic sequence near marker 'mi310'; HTGS phase 1, 12 unordered pieces.
    HTG; HTGS_PHASE1.

AF056631    AF056631     3979bp    DNA      PLN      03-SEP-1998
    Arabidopsis thaliana Ty3/gypsy retrotransposon Tat1-1 gag pseudogene,
     complete sequence.
    gag.

AF056632    AF056632     4038bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana Ty3/gypsy retrotransposon Tat1-2 gag pseudogene,
     complete sequence.
    gag.

AF056633    AF056633     3762bp    DNA      PLN      03-SEP-1998
    Arabidopsis thaliana Ty3/gypsy retrotransposon Tat1-3 gag pseudogene,
     complete sequence; and unknown pseudogene.
    gag.

AF056634    AF056634     2838bp    DNA      PLN      03-SEP-1998
    Arabidopsis thaliana Ty3/gypsy retrotransposon Tat1-4, 3' non-coding
     region.

AF068318    AF068318     1080bp    mRNA     PLN      03-SEP-1998
    Arabidopsis thaliana regulatory subunit of protein kinase CK2 (CKB3)
     mRNA, complete cds.
    CKB3; regulatory subunit of protein kinase CK2.

AF069528    AF069528     1459bp    mRNA     PLN      02-SEP-1998
    Arabidopsis thaliana plant adhesion molecule 1 (PAM1) mRNA, complete cds.
    PAM1; plant adhesion molecule 1.

AF074092    AF074092     4033bp    DNA      PLN      01-SEP-1998
    Arabidopsis thaliana cellulase (DEC) gene, complete cds.
    DEC; cellulase.

AF081570    AF081570      723bp    mRNA     PLN      30-AUG-1998
    Arabidopsis thaliana thymidylate kinase mRNA, partial cds.
    thymidylate kinase.

ATF13D4     AL031369    88098bp    DNA      PLN      26-AUG-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F13D4 (ESSAII project).
    F13D4.10; putative protein; F13D4.20; F13D4.30; Protein phosphatase 2C -
     like protein; F13D4.40; glutathione peroxidase precursor; F13D4.50;
     hypothetical protein; F13D4.60; F13D4.70; F13D4.80; F13D4.90; F13D4.100;
     ATP-dependent Clp proteinase - like protein; F13D4.110; F13D4.120;
     cytochrome P450 - like protein; F13D4.130; F13D4.140; F13D4.150;
     F13D4.160; F13D4.170.

F8M12       AF080118   103673bp    DNA      PLN      03-SEP-1998
    Arabidopsis thaliana BAC F8M12.
    F8M12.14; F8M12.15; F8M12.13; F8M12.12; F8M12.16; F8M12.17; F8M12.11;
     F8M12.10; F8M12.9; F8M12.8; F8M12.7; F8M12.6; F8M12.18; F8M12.19;
     F8M12.5; F8M12.4; F8M12.2; F8M12.20; F8M12.21; F8M12.22; F8M12.1;
     tRNA-OTHER; F8M12.23.

==================== Updated DNA Sequences =====================

AC000107    AC000107   102798bp    DNA      HTG      28-AUG-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F17F8; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002328    AC002328   109160bp    DNA      PLN      29-AUG-1998
    Genomic sequence for Arabidopsis thaliana BAC F20N2, complete sequence.
    HTG.

AC005169    AC005169   133454bp    DNA      HTG      29-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'ATHC' BAC 'F6F22'
     genomic sequence near marker 'mi148'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005170    AC005170   108056bp    DNA      HTG      02-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29E15'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005309    AC005309   143758bp    DNA      HTG      02-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17A22'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 11 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005489    AC005489   100754bp    DNA      HTG      29-AUG-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F14N23; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005508    AC005508    84486bp    DNA      HTG      28-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     T2P11 genomic sequence; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC005310  AC005310    68415bp    DNA      PLN      01-SEP-1998
    Arabidopsis thaliana chromosome II BAC F19D11 genomic sequence, complete
     sequence.
    HTG; F19D11.1; F19D11.2; F19D11.3; F19D11.4; F19D11.5; NAM like protein;
     F19D11.6; putative RNA-binding protein; F19D11.7; F19D11.8; putative
     zinc transporter; F19D11.9; F19D11.10; F19D11.11; DNA-binding protein
     CCA1; F19D11.12; F19D11.13; F19D11.14; putative inorganic
     pyrophosphatase; F19D11.15; putative AP2 domain containing protein;
     F19D11.16; F19D11.17.

=========== Updated Sequence Features/Annotations  =============

AC003970    AC003970    95865bp    DNA      PLN      28-AUG-1998
    Arabidopsis thaliana chromosome I BAC F14J9 genomic sequence contains
     phyA marker, complete sequence.
    HTG; F14J9.1; F14J9.2; F14J9.3; F14J9.4; F14J9.5; F14J9.6; F14J9.7;
     F14J9.8; F19J9.9; F14J9.10; F14J9.11; F14J9.12; F14J9.13; F14J9.14;
     F14J9.15; F14J9.16; F14J9.17; F14J9.18; F14J9.19; F14J9.20; F14J9.21;
     F14J9.22; F14J9.23; phytochrome A; F14J9.24; F14J9.25; Putative
     ribosomal protein L21; F14J9.26.

AF060094    AF060094      200bp    DNA      PLN      02-SEP-1998
    Arabidopsis thaliana glutamate decarboxylase (GAD1) gene, 3' UTR.
    GAD1.

AF067141    AF067141     1050bp    mRNA     PLN      02-SEP-1998
    Arabidopsis thaliana gamma-glutamyl hydrolase mRNA, complete cds.
    gamma-glutamyl hydrolase.

AF083890    AF083890     1527bp    mRNA     PLN      03-SEP-1998
    Arabidopsis thaliana 19S proteosome subunit 9 mRNA, complete cds.
    19S proteosome subunit 9.

ATPUMP      AJ223983     1225bp    mRNA     PLN      27-AUG-1998
    Arabidopsis thaliana mRNA for plant uncoupling mitochondrial protein
     (PUMP).
    mitochondrial uncoupling protein; pump; PUMP; plant uncoupling
     mitochondrial protein.

ATU46665    U46665     1676bp    mRNA     PLN      01-SEP-1998
    Arabidopsis thaliana glutamate decarboxylase 2 (GAD2) mRNA, complete cds.
    GAD2; glutamate decarboxylase 2.

ATU88711    U88711      585bp    mRNA     PLN      02-SEP-1998
    Arabidopsis thaliana copper homeostasis factor (CCH) mRNA, complete cds.
    CCH; copper homeostasis factor.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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