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New Arabidopsis DNA 12-Sep-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Sep 12 13:42:29 EST 1998


====================== New DNA Sequences =======================

AB010690    AB010690     3921bp    DNA      PLN      09-SEP-1998
    Arabidopsis thaliana mutM homologue gene, complete cds.
    alternative splicing; AtMMH-2; AtMMH-1; mutM homologue.

AB011545    AB011545     1120bp    mRNA     PLN      09-SEP-1998
    Arabidopsis thaliana mRNA for GF14 mu, complete cds.
    GF14 mu.

AC005617    AC005617    61542bp    DNA      HTG      04-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T30L20'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005623    AC005623   102499bp    DNA      HTG      05-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20P8'
     genomic sequence near marker 'B68'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AF079587    AF079587     1240bp    DNA      PLN      08-SEP-1998
    Arabidopsis thaliana cyclin-dependent kinase inhibitor (ICK1) gene,
     complete cds.
    ICK1; cyclin-dependent kinase inhibitor.

==================== Updated DNA Sequences =====================

AC004146    AC004146   101933bp    DNA      PLN      04-SEP-1998
    Arabidopsis thaliana chromosome I BAC F5A8 genomic sequence, complete
     sequence.
    HTG.

AC005167    AC005167   103372bp    DNA      HTG      09-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12A24'
     genomic sequence near marker 'mi398'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005171    AC005171   144227bp    DNA      HTG      09-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4E14'
     genomic sequence near marker 'mi310'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005395    AC005395   108593bp    DNA      HTG      04-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17H15'
     genomic sequence near marker 'B68'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005396    AC005396    91477bp    DNA      HTG      05-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26I20'
     genomic sequence near marker 'mi398'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005496    AC005496    90665bp    DNA      HTG      04-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27A16'
     genomic sequence near marker 'mi54'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005561    AC005561    98909bp    DNA      HTG      03-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9F8'
     genomic sequence near marker 'mi310'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC004411  AC004411   106329bp    DNA      PLN      03-SEP-1998
    Arabidopsis thaliana chromosome II BAC F14M4 genomic sequence, complete
     sequence.
    HTG; F14M4.1; putative anion exchange protein 3; F14M4.2; putative
     alcohol dehydrogenase; F14M4.3; F14M4.4; F14M4.5; F14M4.6; ubiquitin
     extension protein (UBQ6); F14M4.7; tRNA-Ala; F14M4.8; F14M4.9; F14M4.10;
     putative squamosa-promoter binding protein; F14M4.11; putative pto
     kinase; F14M4.12; F14M4.13; putative pectinesterase; F14M4.14; F14M4.15;
     putative peptide chain release factor; F14M4.16; F14M4.17; putative
     p-glycoprotein; F14M4.18; IAA20; F14M4.19; putative glucoamylase;
     F14M4.20; F14M4.21; putative cytochrome P450; F14M4.22; F14M4.23;
     F14M4.24; putative pectinacetylesterase precursor; F14M4.25; F14M4.26;
     F14M4.27; F14M4.28; F14M4.29; F14M4.30; putative AP2 domain containing
     protein; F14M4.31; putative inorganic pyrophosphatase.

ATAC005313  AC005313    91318bp    DNA      PLN      05-SEP-1998
    Arabidopsis thaliana chromosome II BAC T18E12 genomic sequence, complete
     sequence.
    HTG; T18E12.1; T18E12.2; T18E12.3; putative disease resistance protein;
     T18E12.4; putative transmembrane protein; T18E12.5; axi 1-like protein;
     T18E12.6; putative DNA-binding protein; T18E12.7; T18E12.8; T18E12.9;
     T18E12.10; T18E12.11; T18E12.12; T18E12.13; putative chloroplast
     nucleoid DNA binding protein; T18E12.14; kinetochore (SKP1p)-like
     protein; T18E12.15; T18E12.16; T18E12.17; T18E12.18; similar to
     axoneme-associated protein mst101; T18E12.19; LEA-like protein;
     T18E12.20; putative ribosomal protein L7/L12; T18E12.21; T18E12.22;
     putative heterogeneous nuclear ribonucleoprotein; T18E12.23.

=========== Updated Sequence Features/Annotations  =============

AC004122    AC004122    67878bp    DNA      PLN      04-SEP-1998
    Arabidopsis thaliana chromosome I BAC T27I1 genomic sequence, complete
     sequence.
    HTG; T27I1.1; T27I1.2; T27I1.3; putative amino acid permease; T27I1.4;
     T27I1.5; T27I1.6; T27I1.7; T27I1.8; T27I1.9; T27I1.10; T27I1.11;
     T27I1.12; T27I1.13; T27I1.14; T27I1.15; T27I1.16; calcium-transporting
     ATPase.

AC004260    AC004260    83822bp    DNA      PLN      04-SEP-1998
    Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete
     sequence.
    HTG; T14N5.1; T14N5.2; AtVPS45p; T14N5.3; T14N5.4; T14N5.5; Putative
     nuclear protein; T14N5.6; T14N5.7; Putative monosaccharide transport
     protein; T14N5.8; T14N5.9; T14N5.10; T14N5.11; T14N5.12; T14N5.13;
     T14N5.14; T14N5.15; T14N5.16.

ATAC002535  AC002535    98937bp    DNA      PLN      03-SEP-1998
    Arabidopsis thaliana chromosome II BAC T30B22 genomic sequence, complete
     sequence.
    HTG; T30B22.1; T30B22.2; putative pectinesterase; T30B22.3; T30B22.4;
     putative dTDP-glucose 4-6-dehydratase; T30B22.5; putative small nuclear
     ribonucleoprotein, Sm D2; T30B22.6; putative lysophospholipase;
     T30B22.7; similar to SWI/SNF complex subunit BAF170; T30B22.8; putative
     ribosomal protein L7A; T30B22.10; putative Na+/Ca2+ exchanger;
     T30B22.11; putative photolyase/blue-light receptor; T30B22.12;
     U1snRNP-specific protein, U1A; T30B22.13; ribosomal protein L18-like;
     T30B22.14; T30B22.15; T30B22.16; T30B22.17; T30B22.18; putative AP2
     domain containing protein; T30B22.19; putative fumarase; T30B22.20;
     kinesin-like protein, heavy chain; T30B22.21; T30B22.22; T30B22.23;
     putative protein disulfide-isomerase precursor; T30B22.24; putative
     MYB-related transcription factor (protein P); T30B22.25; T30B22.26;
     T30B22.27; histidine kinase homolog; T30B22.28; putative
     dimethyladenosine transferase; T30B22.29; putative G-beta-repeat
     containing protein, 5' partial.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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