New Arabidopsis DNA 02-Jan-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Jan 2 14:41:35 EST 1999


====================== New DNA Sequences =======================

AC006258    AC006258   110469bp    DNA      PLN      28-DEC-1998
    Arabidopsis thaliana BAC F18G18 from chromosome V near 60.5 cM, complete
     sequence.
    HTG; F18G18.15; cyclin 3a.

AC006259    AC006259   110680bp    DNA      PLN      28-DEC-1998
    Arabidopsis thaliana BAC F21J6 from chromosome V, containing KNAT3 and
     mapping near 60.5 cM, complete sequence.
    HTG; F21J6.1; putative P450; F21J6.2; F21J6.6; ZFP3 zinc finger protein;
     F21J6.18; KNAT3 homeodomain protein.

AC006260    AC006260    87809bp    DNA      HTG      01-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T2N18'
     genomic sequence near marker 've018'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006264    AC006264   101623bp    DNA      HTG      31-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F26H11'
     genomic sequence near marker ''; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC006266    AC006266   105680bp    DNA      PLN      01-JAN-1999
    Arabidopsis thaliana BAC F1K3 from chromosome IV near 21 cM, complete
     sequence.
    HTG.

AC006267    AC006267   101644bp    DNA      PLN      01-JAN-1999
    Arabidopsis thaliana chromosome IV map near 21 cM, complete sequence.
    HTG.

AC006268    AC006268   105420bp    DNA      PLN      01-JAN-1999
    Arabidopsis thaliana BAC T24G23 from chromosome IV near 21 cM, complete
     sequence.
    HTG.

AF003472    AF003472     2209bp    mRNA     PLN      01-JAN-1999
    Arabidopsis thaliana pentacyclic triterpene synthase mRNA, partial cds.
    pentacyclic triterpene synthase.

AF025333    AF025333     1106bp    mRNA     PLN      01-JAN-1999
    Arabidopsis thaliana vesicle-associated membrane protein 7B (At VAMP7B)
     mRNA, complete cds.
    At VAMP7B; vesicle-associated membrane protein 7B.

AF037367    AF037367     4229bp    DNA      PLN      01-JAN-1999
    Arabidopsis thaliana endo-polygalacturonase gene, complete cds.
    endo-polygalacturonase.

AF053345    AF053345     1563bp    DNA      PLN      01-JAN-1999
    Arabidopsis thaliana fatty acid elongase 3-ketoacyl-CoA synthase 1 (KCS1)
     gene, complete cds.
    KCS1; fatty acid elongase 3-ketoacyl-CoA synthase 1.

AF076155    AF076155     8729bp    DNA      PLN      01-JAN-1999
    Arabidopsis thaliana CRT/CRE binding factor 1 (CBF1), CRT/DRE binding
     factor 3 (CBF3), and CRT/DRE binding factor 2 (CBF2) genes, complete
     cds.
    CBF1; CRT/CRE binding factor 1; CBF3; CRT/DRE binding factor 3; CBF2;
     CRT/DRE binding factor 2.

AF104327    AF104327      765bp    mRNA     PLN      28-DEC-1998
    Arabidopsis thaliana extensin-like protein (ELP) mRNA, complete cds.
    ELP; extensin-like protein.

ATH012310   AJ012310     1227bp    mRNA     PLN      30-DEC-1998
    Arabidopsis thaliana mRNA for WUSCHEL protein.
    wuschel gene; WUSCHEL protein; wuschel.

ATH131710   AJ131710     3892bp    DNA      PLN      29-DEC-1998
    Arabidopsis thaliana pepc gene, exons 1-10.
    pepc gene; phospho enole pyruvate carboxylase; pepc.

ATH131722   AJ131722     1350bp    mRNA     PLN      29-DEC-1998
    Arabidopsis thaliana mRNA for hypothetical protein, partial.
    hypothetical protein; membrane protein; ORF1.

ATU73325    U73325     5320bp    DNA      PLN      01-JAN-1999
    Arabidopsis thaliana K+ inward rectifying channel protein (AtKC1) gene,
     complete cds.
    AtKC1; K+ inward rectifying channel protein.

ATU79156    U79156     5242bp    DNA      PLN      01-JAN-1999
    Arabidopsis thaliana Myb-related transcription factor CCA1 gene, complete
     cds.
    CCA1.

==================== Updated DNA Sequences =====================

AC003027    AC003027   119914bp    DNA      PLN      30-DEC-1998
    Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete
     sequence.
    HTG.

AC005825    AC005825   120805bp    DNA      HTG      29-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24I21'
     genomic sequence near marker 'mi398'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC006085    AC006085   105863bp    DNA      HTG      30-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     F11M15 genomic sequence; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006161    AC006161   106813bp    DNA      HTG      01-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T14A4'
     genomic sequence near marker 'mi310'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006194    AC006194    98435bp    DNA      HTG      01-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17A11'
     genomic sequence near marker 'GPC6'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006200    AC006200   106621bp    DNA      HTG      31-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F10A8'
     genomic sequence near marker 'rga'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC006218    AC006218    98682bp    DNA      HTG      29-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17L24'
     genomic sequence near marker 'GPC6'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC006232    AC006232    98834bp    DNA      HTG      01-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F10A12'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006233    AC006233    97576bp    DNA      HTG      31-DEC-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12K2'
     genomic sequence near marker 'B68'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC005561  AC005561    90859bp    DNA      PLN      28-DEC-1998
    Arabidopsis thaliana chromosome II BAC T9F8 genomic sequence, complete
     sequence.
    HTG; T9F8.1; putative retrotransposon; T9F8.2; T9F8.3; T9F8.4;
     endo-xyloglucan transferase; T9F8.5; T9F8.6; T9F8.7; T9F8.8; putative
     POL3 protein.

ATAC005851  AC005851    91261bp    DNA      PLN      28-DEC-1998
    Arabidopsis thaliana chromosome II BAC F24D13 genomic sequence, complete
     sequence.
    HTG; F24D13.1; zinc finger protein; F24D13.2; putative copper/zinc
     superoxide dismutase; F24D13.3; putative Na/H antiporter; F24D13.4;
     F24D13.5; putative phaseolin G-box binding protein; F24D13.6; F24D13.7;
     F24D13.8; F24D13.9; nodulin-like protein; F24D13.10; F24D13.11;
     F24D13.12; F24D13.13; putative indole-3-acetate beta-glucosyltransferase
     synthetase; F24D13.14; putative white protein; F24D13.15; F24D13.16;
     putative salt-inducible protein; F24D13.17; putative chloroplast
     nucleoid DNA binding protein; F24D13.18.

=========== Updated Sequence Features/Annotations  =============

AF071527    AF071527    95519bp    DNA      PLN      31-DEC-1998
    Arabidopsis thaliana BAC F9H3, chromosome IV, 18.8 cM, complete sequence.
    HTG; tRNA-Phe; tRNA-Gln.

ATH5813     AJ005813     1846bp    mRNA     PLN      23-DEC-1998
    Arabidopsis thaliana mRNA for neoxanthin cleavage enzyme.
    nc1 gene; neoxanthin cleavage enzyme; nc1.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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