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New Arabidopsis DNA 17-Jul-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Wed Jul 21 10:55:26 EST 1999


====================== New DNA Sequences =======================

AB017643    AB017643     1593bp    mRNA     PLN      15-JUL-1999
    Arabidopsis thaliana mRNA for Short-chain acyl CoA oxidase, complete cds.
    Short-chain acyl CoA oxidase.

AB019942    AB019942     4530bp    DNA      PLN      14-JUL-1999
    Arabidopsis thaliana gene for sigma factor SigA, complete cds.
    sigma factor SigA; sigA.

AB019943    AB019943     4623bp    DNA      PLN      14-JUL-1999
    Arabidopsis thaliana gene for sigma factor SigB, complete cds.
    sigma factor SigB; sigB.

AB019944    AB019944     3640bp    DNA      PLN      14-JUL-1999
    Arabidopsis thaliana gene for sigma factor SigC, complete cds.
    sigma factor SigC; sigC.

AB021316    AB021316     1928bp    mRNA     PLN      15-JUL-1999
    Arabidopsis thaliana mRNA for chlorophyll b synthase, complete cds.
    chlorophyll b synthase; CAO.

AB022676    AB022676      879bp    mRNA     PLN      13-JUL-1999
    Arabidopsis thaliana rps9 mRNA for ribosomal protein S9, complete cds.
    RPS9; ribosomal protein S9; rps9.

AC008007    AC008007   132085bp    DNA      HTG      14-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F12M16, WORKING DRAFT SEQUENCE, 6
     unordered pieces.
    HTG; HTGS_PHASE1.

AC008016    AC008016   117021bp    DNA      HTG      10-JUL-1999
    Arabidopsis thaliana chromosome 1, WORKING DRAFT SEQUENCE, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC008017    AC008017   116330bp    DNA      HTG      10-JUL-1999
    Arabidopsis thaliana chromosome I clone F3N23, WORKING DRAFT SEQUENCE, 2
     unordered pieces.
    HTG; HTGS_PHASE1.

AC008030    AC008030    57455bp    DNA      HTG      12-JUL-1999
    Arabidopsis thaliana chromosome I clone F1N18, WORKING DRAFT SEQUENCE, 7
     unordered pieces.
    HTG; HTGS_PHASE1.

AC008046    AC008046    94529bp    DNA      HTG      14-JUL-1999
    Arabidopsis thaliana chromosome I clone F5A13, WORKING DRAFT SEQUENCE, 5
     unordered pieces.
    HTG; HTGS_PHASE1.

AF130441    AF130441     1818bp    mRNA     PLN      15-JUL-1999
    Arabidopsis thaliana UVB-resistance protein UVR8 (UVR8) mRNA, complete
     cds.
    UVR8; UVB-resistance protein UVR8.

ATH17722    Y17722     4058bp    DNA      PLN      12-JUL-1999
    Arabidopsis thaliana trp1 gene.
    telomere repeat-binding protein; TRP1 gene; trp1; telomere repeat-binding
     protein TRP1.

ATH243468   AJ243468     4583bp    DNA      PLN      12-JUL-1999
    Arabidopsis thaliana RPS4 gene for disease resistance protein.
    disease resistance protein RPS4; RPS4 gene; RPS4.

==================== Updated DNA Sequences =====================

AC007504    AC007504   125021bp    DNA      PLN      09-JUL-1999
    Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete
     sequence.
    HTG; F13F21.1; F13F21.2; F13F21.3; geranyl geranyl pyrophosphate
     synthase; F13F21.4; F13F21.5; F13F21.6; F13F21.7; F13F21.8; F13F21.9;
     F13F21.10; F13F21.11; F13F21.12; F13F21.13; F13F21.14; Putative acyl CoA
     synthetase; F13F21.15; F13F21.16; F13F21.17; Putative ribosomal protein;
     F13F21.18; Similar to ethylene-forming-enzyme-like dioxygenase;
     F13F21.19; Similar to CCS1; F13F21.20; F13F21.21; F13F21.22; F13F21.23;
     Putative Phosphatidylinositol 4-kinase PI4K; F13F21.24; F13F21.25;
     Putative BURP domain containing protein; F13F21.26; Putative RAB7
     GTP-binding Protein; F13F21.27; F13F21.28; Similar to somatic
     embryogenesis receptor-like kinase; F13F21.29.

AC007519    AC007519   171769bp    DNA      PLN      09-JUL-1999
    Arabidopsis thaliana chromosome 1 BAC F16N3 sequence, complete sequence.
    HTG.

AC007887    AC007887   154674bp    DNA      HTG      08-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F15O4, WORKING DRAFT SEQUENCE, 6
     unordered pieces.
    HTG; HTGS_PHASE1.

AC007927    AC007927   106159bp    DNA      HTG      08-JUL-1999
    Arabidopsis thaliana chromosome II clone IGF-F11L15, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC007945    AC007945    80469bp    DNA      PLN      08-JUL-1999
    Genomic sequence for Arabidopsis thaliana BAC F28C11 from chromosome I,
     complete sequence.
    HTG.

=========== Updated Sequence Features/Annotations  =============

AB027153    AB027153     1456bp    mRNA     PLN      14-JUL-1999
    Arabidopsis thaliana ATSRPK1 mRNA for SNF1 related protein kinase,
     partial cds.
    SNF1 related protein kinase; ATSRPK1.

AC005698    AC005698    97054bp    DNA      PLN      13-JUL-1999
    Genomic sequence for Arabidopsis thaliana BAC T3P18 from Chromosome 1,
     complete sequence.
    HTG; T3P18.1; T3P18.2; T3P18.3; T3P18.4; T3P18.5; T3P18.6; T3P18.7;
     T3P18.8; T3P18.9; T3P18.10; T3P18.11; T3P18.12; T3P18.13; T3P18.14;
     T3P18.15; T3P18.16; T3P18.17; T3P18.18; T3P18.19; T3P18.20; T3P18.21;
     T3P18.22.

AC007505    AC007505   135907bp    DNA      HTG      12-JUL-1999
    Arabidopsis thaliana chromosome I clone F28L22, WORKING DRAFT SEQUENCE, 3
     unordered pieces.
    HTG; HTGS_PHASE1.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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