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New Arabidopsis DNA 24-Jul-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Jul 26 11:39:32 EST 1999


====================== New DNA Sequences =======================

AC008047    AC008047    91235bp    DNA      HTG      15-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F2K11, WORKING DRAFT SEQUENCE, 10
     unordered pieces.
    HTG; HTGS_PHASE1.

AC008051    AC008051    88520bp    DNA      HTG      16-JUL-1999
    Arabidopsis thaliana chromosome 1, WORKING DRAFT SEQUENCE, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC008075    AC008075   100474bp    DNA      HTG      19-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F24J5, WORKING DRAFT SEQUENCE, 2
     unordered pieces.
    HTG; HTGS_PHASE1.

AF148649    AF148649      684bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana 6,7-dimethyl-8-ribityllumazine synthase precursor,
     mRNA, complete cds; nuclear gene for chloroplast product.
    6,7-dimethyl-8-ribityllumazine synthase precursor.

AF159255    AF159255     1302bp    mRNA     PLN      22-JUL-1999
    Arabidopsis thaliana sporocyteless (SPL) mRNA, complete cds.
    SPL; sporocyteless.

AF163819    AF163819     3000bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana endoxyloglucan transferase (EXGT-A1) gene, complete
     cds.
    EXGT-A1; endoxyloglucan transferase.

AF163820    AF163820     3000bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana endoxyloglucan transferase (XTR2) gene, complete
     cds.
    XTR2; endoxyloglucan transferase.

AF163821    AF163821     2917bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana endoxyloglucan transferase (EXGT-A3) gene, complete
     cds.
    EXGT-A3; endoxyloglucan transferase.

AF163822    AF163822     2645bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana endoxyloglucan transferase (EXGT-A4) gene, complete
     cds.
    EXGT-A4; endoxyloglucan transferase.

AF163823    AF163823     2703bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana endoxyloglucan transferase (XTR3) gene, complete
     cds.
    XTR3; endoxyloglucan transferase.

AF165429    AF165429     1947bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana protein phosphatase 2A 62 kDa B'' regulatory subunit
     mRNA, complete cds.
    protein phosphatase 2A 62 kDa B'' regulatory subunit.

AP000368    AP000368    37511bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: F6B6, complete
     sequence.
    HTG.

AP000369    AP000369    11049bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: F6I13, complete
     sequence.
    HTG.

AP000370    AP000370    79279bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K15N2,
     complete sequence.
    HTG.

AP000371    AP000371    58864bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K16N12,
     complete sequence.
    HTG.

AP000372    AP000372    36824bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K23F3,
     complete sequence.
    HTG.

AP000373    AP000373    71521bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDC8, complete
     sequence.
    HTG.

AP000374    AP000374    20724bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEE5, complete
     sequence.
    HTG.

AP000375    AP000375    62948bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJG9, complete
     sequence.
    HTG.

AP000376    AP000376      611bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTE24, complete
     sequence.
    HTG.

AP000377    AP000377    71178bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYM9, complete
     sequence.
    HTG.

AP000378    AP000378    18384bp    DNA      PLN      20-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: T4M5, complete
     sequence.
    HTG.

ATH132404   AJ132404     2090bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana anti-sense transcript, AKL kinase-like gene.
    AKL kinase-like gene; anti-sense transcript; AKL kinase-like.

ATH240063   AJ240063       94bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for U24a snoRNA.
    small nucleolar RNA; U24a snoRNA.

ATH240064   AJ240064       91bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for U59a snoRNA.
    small nucleolar RNA; U59a snoRNA.

ATH240065   AJ240065       76bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for U59b snoRNA.
    small nucleolar RNA; U59b snoRNA.

ATH240066   AJ240066       87bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for U25 snoRNA.
    small nucleolar RNA; U25 snoRNA.

ATH240067   AJ240067       89bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Snr38 snoRNA.
    small nucleolar RNA; Snr38 snoRNA.

ATH240068   AJ240068       85bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z37 snoRNA.
    small nucleolar RNA; Z37 snoRNA.

ATH240069   AJ240069       86bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for snr40 snoRNA.
    small nucleolar RNA; snr40 snoRNA.

ATH240070   AJ240070       95bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z27b snoRNA.
    small nucleolar RNA; Z27b snoRNA.

ATH240071   AJ240071      103bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z41a snoRNA.
    small nucleolar RNA; Z41a snoRNA.

ATH240072   AJ240072       98bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z41b snoRNA.
    small nucleolar RNA; Z41b snoRNA.

ATH240073   AJ240073      155bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z4 snoRNA.
    small nucleolar RNA; Z4 snoRNA.

ATH240074   AJ240074       88bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z15 snoRNA.
    small nucleolar RNA; Z15 snoRNA.

ATH240075   AJ240075       78bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for U40 snoRNA.
    small nucleolar RNA; U40 snoRNA.

ATH240076   AJ240076       77bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z11 snoRNA.
    small nucleolar RNA; Z11 snoRNA.

ATH240077   AJ240077       95bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z44a snoRNA.
    small nucleolar RNA; Z44a snoRNA.

ATH240078   AJ240078       97bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z44b snoRNA.
    small nucleolar RNA; Z44b snoRNA.

ATH240079   AJ240079       97bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z44c snoRNA.
    small nucleolar RNA; Z44c snoRNA.

ATH240080   AJ240080      102bp    mRNA     PLN      20-JUL-1999
    Arabidopsis thaliana mRNA for Z43 snoRNA.
    small nucleolar RNA; Z43 snoRNA.

ATH243490   AJ243490     3456bp    DNA      PLN      14-JUL-1999
    Arabidopsis thaliana pyk10 gene for thioglucoside glucohydrolase.
    pyk10 gene; thioglucoside glucohydrolase; pyk10.

ATH243812   AJ243812     2795bp    DNA      PLN      16-JUL-1999
    Arabidopsis thaliana gsh2 gene for glutathione synthetase.
    glutathione synthetase; gsh2 gene; gsh2.

ATH243813   AJ243813     1745bp    mRNA     PLN      16-JUL-1999
    Arabidopsis thaliana mRNA for glutathione synthetase (gsh2 gene).
    glutathione synthetase; gsh2 gene; gsh2.

ATH243822   AJ243822     2574bp    mRNA     PLN      14-JUL-1999
    Arabidopsis thaliana mRNA for Mre11 protein (MRE11 gene).
    MRE11 gene; Mre11 protein; MRE11.

ATT21L8     AL096860    87224bp    DNA      PLN      19-JUL-1999
    Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8.
    T21L8.10; putative protein; T21L8.20; T21L8.30; T21L8.40;
     1-phosphatidylinositol-4, 5-bisphosphate phosphodiesterase; T21L8.50;
     T21L8.60; T21L8.70; T21L8.80; T21L8.90; glutamine-dependent asparagine
     synthetase; T21L8.100; T21L8.110; T21L8.120; 40S RIBOSOMAL PROTEIN S20
     homolog; T21L8.130; T21L8.140; T21L8.150; pectinesterase-like protein;
     T21L8.160; hypthetical protein; T21L8.170; T21L8.180; T21L8.190;
     aquaporin-like protein; T21L8.200; T21L8.210; chromosome-associated
     protein-E homolog (fragment).

ATT24C20    AL096856   103889bp    DNA      PLN      19-JUL-1999
    Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20.
    T24C20.10; ribosomal protein L13 homolog; T24C20.20; B12D-like protein;
     T24C20.30; cell division cycle protein 23 homolog; T24C20.40; putative
     protein; T24C20.50; betaine aldehyde dehydrogenase-like protein;
     T24C20.60; hypothetical protein; T24C20.70; T24C20.80; T24C20.90;
     T24C20.100; T24C20.110.

ATT6H20     AL096859    98461bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana DNA chromosome 3, BAC clone T6H20.
    T6H20.10; putative helicase, fragment; T6H20.20; putative protein;
     T6H20.30; dUTP pyrophosphatase-like protein; T6H20.40; protein kinase
     6-like protein; T6H20.50; T6H20.60; T6H20.70; copper transporter protein
     homolog; T6H20.80; T6H20.90; hypothetical protein; T6H20.100; T6H20.110;
     T6H20.120; subtilisin-like proteinase homolog; T6H20.130; T6H20.140;
     Rab11 protein; T6H20.150; phosphoprotein phosphatase; T6H20.160;
     T6H20.170; T6H20.180; T6H20.190; T6H20.200; T6H20.210; receptor like
     protein kinase; T6H20.220; serine/threonine kinase-like protein;
     T6H20.230; chloroplast import-associated channel homolog; T6H20.240;
     T6H20.250; glucuronosyl transferase-like protein; T6H20.260; T6H20.270;
     T6H20.280; T6H20.290; glucuronosyl transferase-like protein (fragment).

L77688      L77688     2607bp    DNA      PLN      23-JUL-1999
    Arabidopsis thaliana mevalonate kinase (MK) gene, complete cds.
    mevalonate kinase; MK.

==================== Updated DNA Sequences =====================

AC005916    AC005916    65839bp    DNA      PLN      23-JUL-1999
    Arabidopsis thaliana chromosome 1 BAC T17H3 sequence, complete sequence.
    HTG.

AC007764    AC007764   111222bp    DNA      PLN      16-JUL-1999
    Genomic sequence for Arabidopsis thaliana BAC F22C12 from chromosome I,
     complete sequence.
    HTG.

AC007887    AC007887   157787bp    DNA      HTG      22-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F15O4, WORKING DRAFT SEQUENCE, 4
     unordered pieces.
    HTG; HTGS_PHASE1.

AC008007    AC008007   129757bp    DNA      HTG      15-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F12M16, WORKING DRAFT SEQUENCE, 4
     unordered pieces.
    HTG; HTGS_PHASE1.

AC008017    AC008017   116944bp    DNA      PLN      15-JUL-1999
    Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete
     sequence.
    HTG.

ATF28P10    AL049655    90736bp    DNA      PLN      19-JUL-1999
    Arabidopsis thaliana DNA chromosome 3, BAC clone F28P10.
    F28P10.10; phosphoribosylformylglycinamidine cyclo-ligase (fragment);
     F28P10.20; hypothetical protein; F28P10.30; APETALA2-like protein;
     F28P10.40; putative protein; F28P10.50; F28P10.60; protein
     disulfide-isomerase-like protein; F28P10.70; F28P10.80; cysteine
     proteinase precursor-like protein; F28P10.90; B' regulatory subunit of
     PP2A-like protein; F28P10.100; pectate lyase-like protein; F28P10.110;
     F28P10.120; F28P10.130; chlorophyll a/b-binding protein; F28P10.140;
     F28P10.150; kinesin-like protein; F28P10.160; vacuolar protein
     sorting-like protein; F28P10.170; F28P10.180; small GTP-binding
     protein-like (fragment); F28P10.190; F28P10.200; aquaporin/MIP-like
     protein; F28P10.210.

=========== Updated Sequence Features/Annotations  =============

AB010888    AB010888     6651bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana gene for cystathionine gamma-synthase, complete cds.
    cystathionine gamma-synthase; CGS1.

AB020742    AB020742    74342bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K21H1,
     complete sequence.
    HTG.

AB020743    AB020743    11211bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K22J17,
     complete sequence.
    HTG.

AB020744    AB020744    62052bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K9E15,
     complete sequence.
    HTG.

AB020745    AB020745    74298bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJE7, complete
     sequence.
    HTG.

AB020746    AB020746    79706bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24, complete
     sequence.
    HTG.

AB020747    AB020747    29605bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MPI10, complete
     sequence.
    HTG.

AB020748    AB020748     3544bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MPK23, complete
     sequence.
    HTG.

AB020749    AB020749    76816bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRC8, complete
     sequence.
    HTG.

AB020750    AB020750     3007bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRD20, complete
     sequence.
    HTG.

AB020751    AB020751    55151bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRG21, complete
     sequence.
    HTG.

AB020752    AB020752    68098bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTH16, complete
     sequence.
    HTG.

AB020753    AB020753    11026bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MWP19, complete
     sequence.
    HTG.

AB020754    AB020754    54528bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MYN8, complete
     sequence.
    HTG.

AB020755    AB020755    81672bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MZN1, complete
     sequence.
    HTG.

AF056550    AF056550      739bp    DNA      PLN      22-JUL-1999
    Arabidopsis thaliana LEAFY protein (LFY) gene, LFY-Co allele, partial
     cds.
    LFY; LEAFY protein.

AF098632    AF098632     8221bp    DNA      PLN      16-JUL-1999
    Arabidopsis thaliana subtilisin-like protease (AIR3) gene, complete cds.
    AIR3; subtilisin; subtilisin-like protease.

AF118822    AF118822      169bp    mRNA     PLN      15-JUL-1999
    Arabidopsis thaliana senescence-associated protein (SAG24) mRNA, partial
     cds.
    SAG24; senescence-associated protein.

AF118823    AF118823      173bp    mRNA     PLN      15-JUL-1999
    Arabidopsis thaliana senescence-associated protein (SAG26) mRNA, partial
     cds.
    SAG26; senescence-associated protein.

AF118824    AF118824      256bp    mRNA     PLN      15-JUL-1999
    Arabidopsis thaliana senescence-associated protein (SAG29) mRNA, partial
     cds.
    SAG29; senescence-associated protein.

AF126057    AF126057     2260bp    mRNA     PLN      19-JUL-1999
    Arabidopsis thaliana microtubule-associated protein mRNA, complete cds.
    microtubule-associated protein.

AF139188    AF139188     1013bp    mRNA     PLN      21-JUL-1999
    Arabidopsis thaliana HCF106 mRNA, complete cds; nuclear gene for
     chloroplast product.
    HCF106.

AT194GE     Y10986     4900bp    DNA      PLN      19-JUL-1999
    A.thaliana gene encoding hypothetical protein (194 gene).
    hypothetical protein; 194; hypothetical protein 194.

ATCDNA137   Y10863      524bp    mRNA     PLN      19-JUL-1999
    A.thaliana mRNA for hypothetical protein (cDNA137), partial.
    hypothetical protein (cDNA137).

ATCDNA194   Y10864     1476bp    mRNA     PLN      19-JUL-1999
    A.thaliana mRNA for hypothetical protein (cDNA194), partial.
    hypothetical protein (cDNA194).

ATH131391   AJ131391     1107bp    mRNA     PLN      14-JUL-1999
    Arabidopsis thaliana mRNA for voltage-dependent anion-selective channel
     protein.
    hsr2 gene; voltage-dependent anion-selective channel protein; hsr2.

ATH131392   AJ131392     1360bp    mRNA     PLN      14-JUL-1999
    Arabidopsis thaliana mRNA for alternative oxidase.
    alternative oxidase; hsr3 gene; hsr3.

ATH243377   AJ243377      364bp    mRNA     PLN      14-JUL-1999
    Arabidopsis thaliana EST clone Athsr4.
    hypothetical protein.

ATH243378   AJ243378      137bp    mRNA     PLN      14-JUL-1999
    Arabidopsis thaliana EST clone Athsr5.
    hypothetical protein.

ATH243379   AJ243379       95bp    mRNA     PLN      14-JUL-1999
    Arabidopsis thaliana EST clone Athsr6.
    hypothetical protein.

ATH243380   AJ243380      128bp    mRNA     PLN      14-JUL-1999
    Arabidopsis thaliana EST Athsr7.
    hypothetical protein.

ATH7791     AJ007791     3521bp    mRNA     PLN      13-JUL-1999
    Arabidopsis thaliana mRNA for mismatch repair protein (Msh3).
    DNA mismatch repair protein; MSH3 gene; msh3; Msh3 protein.

ATRSZP21    AJ002377      895bp    mRNA     PLN      22-JUL-1999
    Arabidopsis thaliana mRNA for RSZp21 splicing factor.
    Zn; 21kD protein; arginine/serine-rich; RSZp21; splicing factor; RSZp21
     protein.

ATRSZP22    AJ002378      894bp    mRNA     PLN      22-JUL-1999
    Arabidopsis thaliana mRNA for RSZp22 splicing factor.
    Zn; 22kD protein; arginine/serine-rich; RSZp22; splicing factor; RSZp22
     protein.

ATU37700    U37700      841bp    mRNA     PLN      22-JUL-1999
    Arabidopsis thaliana phosphoglycerate kinase mRNA, partial cds.
    phosphoglycerate kinase.

ATU37701    U37701     1354bp    mRNA     PLN      22-JUL-1999
    Arabidopsis thaliana phosphoglycerate kinase mRNA, partial cds.
    phosphoglycerate kinase.

ATU37702    U37702     2257bp    mRNA     PLN      22-JUL-1999
    Arabidopsis thaliana cellulase (OR16pep) mRNA, complete cds.
    cellulase; prediction according to the van Hejne parameters with an only
     moderate probability.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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