New Arabidopsis DNA 25-Oct-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Oct 25 18:48:04 EST 1999


====================== New DNA Sequences =======================

A72448      A72448      350bp    DNA      PAT      15-OCT-1999
    Sequence 35 from Patent WO9530747.

A74281      A74281     1735bp    DNA      PAT      15-OCT-1999
    Sequence 3 from Patent WO9401564.

A75959      A75959     2114bp    DNA      PAT      19-OCT-1999
    Sequence 1 from Patent WO9321326.
    ARA B; NADPH CYTOCHROME P450 REDUCTASE.

A75961      A75961     2423bp    DNA      PAT      19-OCT-1999
    Sequence 3 from Patent WO9321326.
    ARA C; NADPH CYTOCHROME P450 REDUCTASE.

A78951      A78951      138bp    DNA      PAT      20-OCT-1999
    Sequence 5 from Patent WO9829554.

A78957      A78957     1704bp    DNA      PAT      20-OCT-1999
    Sequence 11 from Patent WO9829554.
    PROTOPORPHYRINOGEN OXIDASE.

A79355      A79355     2163bp    DNA      PAT      20-OCT-1999
    Sequence 4 from Patent WO9746692.

A79358      A79358       35bp    DNA      PAT      20-OCT-1999
    Sequence 7 from Patent WO9746692.

A80158      A80158      350bp    DNA      PAT      20-OCT-1999
    Sequence 35 from Patent WO9530748.

AB033294    AB033294     6468bp    DNA      PLN      16-OCT-1999
    Arabidopsis thaliana DFR gene for dihydroflavonol 4-reductase, complete
     cds.
    DFR; dihydroflavonol 4-reductase.

AC011698    AC011698    68163bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T11I18, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC011708    AC011708    82316bp    DNA      HTG      22-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T7M13, WORKING DRAFT
     SEQUENCE, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC011713    AC011713   111198bp    DNA      HTG      13-OCT-1999
    Arabidopsis thaliana chromosome 1 clone F23A5, WORKING DRAFT SEQUENCE, 2
     ordered pieces.
    HTG; HTGS_PHASE2.

AC011717    AC011717   119931bp    DNA      HTG      23-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F19K16, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC011765    AC011765   141876bp    DNA      HTG      23-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F1M20, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC011807    AC011807    79825bp    DNA      HTG      15-OCT-1999
    Arabidopsis thaliana chromosome I clone F14J22, WORKING DRAFT SEQUENCE,
     16 unordered pieces.
    HTG; HTGS_PHASE1.

AC011808    AC011808    91339bp    DNA      HTG      15-OCT-1999
    Arabidopsis thaliana chromosome I clone F19K19, WORKING DRAFT SEQUENCE, 6
     unordered pieces.
    HTG; HTGS_PHASE1.

AC011809    AC011809   107928bp    DNA      HTG      15-OCT-1999
    Arabidopsis thaliana chromosome I clone F6A14, WORKING DRAFT SEQUENCE, 4
     unordered pieces.
    HTG; HTGS_PHASE1.

AC011810    AC011810    88795bp    DNA      HTG      15-OCT-1999
    Arabidopsis thaliana chromosome I clone T6J4, WORKING DRAFT SEQUENCE, 13
     unordered pieces.
    HTG; HTGS_PHASE1.

AC011914    AC011914   102286bp    DNA      HTG      20-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F14K14, WORKING DRAFT
     SEQUENCE, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC011915    AC011915    80949bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome I clone TAMU-T26J14, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC012187    AC012187    86284bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome 1 clone F13K23, WORKING DRAFT SEQUENCE, 3
     unordered pieces.
    HTG; HTGS_PHASE1.

AC012188    AC012188   112998bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome 1 clone F14L17, WORKING DRAFT SEQUENCE, 4
     unordered pieces.
    HTG; HTGS_PHASE1.

AC012189    AC012189    78421bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome 1 clone T15D22, WORKING DRAFT SEQUENCE, 1
     ordered pieces.
    HTG; HTGS_PHASE2.

AC012190    AC012190    83856bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome 1 clone T22I11, WORKING DRAFT SEQUENCE, 3
     unordered pieces.
    HTG; HTGS_PHASE1.

AC012193    AC012193   102071bp    DNA      HTG      23-OCT-1999
    Arabidopsis thaliana chromosome I clone TAMU-T32E8, WORKING DRAFT
     SEQUENCE, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC012327    AC012327    95986bp    DNA      HTG      23-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T14A11, WORKING DRAFT
     SEQUENCE, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC012328    AC012328   103845bp    DNA      HTG      23-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T17B22, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC012329    AC012329    82406bp    DNA      HTG      23-OCT-1999
    Arabidopsis thaliana chromosome I clone TAMU-T1G12, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AF134485    AF134485     1005bp    mRNA     PLN      21-OCT-1999
    Arabidopsis thaliana cytidine deaminase 1 (cda1) mRNA, partial cds.
    cda1; cytidine deaminase 1.

AF134486    AF134486      828bp    mRNA     PLN      21-OCT-1999
    Arabidopsis thaliana clone 149H23T7 cytidine deaminase 1 (cda1) mRNA,
     partial cds.
    cda1; cytidine deaminase 1.

AF134487    AF134487     1161bp    mRNA     PLN      21-OCT-1999
    Arabidopsis thaliana cytidine deaminase 1 (cda1) mRNA, complete cds.
    cda1; cytidine deaminase 1.

AF177672    AF177672     2277bp    DNA      PLN      16-OCT-1999
    Arabidopsis thaliana cultivar Columbia receptor-like protein CLAVATA2
     (CLV2) gene, complete cds.
    CLV2; receptor-like protein CLAVATA2.

AF177673    AF177673     2163bp    DNA      PLN      16-OCT-1999
    Arabidopsis thaliana cultivar Lansberg erecta receptor-like protein
     CLAVATA2 (CLV2) gene, complete cds.
    CLV2; receptor-like protein CLAVATA2.

AF177674    AF177674     2163bp    DNA      PLN      16-OCT-1999
    Arabidopsis thaliana cultivar Wassilewskia receptor-like protein CLAVATA2
     (CLV2) gene, complete cds.
    CLV2; receptor-like protein CLAVATA2.

AF186847    AF186847     1134bp    mRNA     PLN      24-OCT-1999
    Arabidopsis thaliana TIM17 (TIM17) mRNA, complete cds.
    TIM17.

AF187317    AF187317     5815bp    mRNA     PLN      23-OCT-1999
    Arabidopsis thaliana CAF protein (CAF) mRNA, complete cds.
    CAF; CAF protein.

AP000599    AP000599    18284bp    DNA      PLN      15-OCT-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K9I22,
     complete sequence.
    HTG.

AP000600    AP000600    73859bp    DNA      PLN      15-OCT-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2, complete
     sequence.
    HTG.

AP000601    AP000601     9642bp    DNA      PLN      15-OCT-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJL14, complete
     sequence.
    HTG.

AP000602    AP000602    12106bp    DNA      PLN      15-OCT-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP17, complete
     sequence.
    HTG.

AP000603    AP000603    83287bp    DNA      PLN      15-OCT-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15, complete
     sequence.
    HTG.

AP000604    AP000604    63748bp    DNA      PLN      15-OCT-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6, complete
     sequence.
    HTG.

AP000605    AP000605     7150bp    DNA      PLN      15-OCT-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSK20, complete
     sequence.
    HTG.

AP000606    AP000606    82360bp    DNA      PLN      15-OCT-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTO24, complete
     sequence.
    HTG.

AP000607    AP000607    49648bp    DNA      PLN      15-OCT-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone: T25O11,
     complete sequence.
    HTG.

ATH012758   AJ012758      943bp    mRNA     PLN      15-OCT-1999
    Arabidopsis thaliana mRNA for nucleotide diphosphate kinase Ia.
    NDP kinase; NDPK Ia gene; nucleotide diphosphate kinase Ia; NDPK Ia.

ATH250341   AJ250341     1944bp    mRNA     PLN      15-OCT-1999
    Arabidopsis thaliana mRNA for beta-amylase enzyme (ct-bmy gene).
    beta-amylase enzyme; ct-bmy gene; ct-bmy.

ATH250430   AJ250430     1823bp    mRNA     PLN      20-OCT-1999
    Arabidopsis thaliana mRNA for pectin methylesterase (pme5 gene).
    pectin methylesterase; pme5 gene; pme5.

ATJ00162    AJ001362     2411bp    DNA      PLN      21-OCT-1999
    Arabidopsis thaliana promoter of monosaccharide transporter gene AtSTP2.
    monosaccharide transporter; AtSTP2; monosaccharide tranporter.

ATJ00163    AJ001363     1817bp    DNA      PLN      21-OCT-1999
    Arabidopsis thaliana promoter of monosaccharide transporter gene AtSTP3.
    monosaccharide transporter; AtSTP3; monosaccharide tranporter.

F5I10       AF195115   111906bp    DNA      PLN      16-OCT-1999
    Arabidopsis thaliana BAC F5I10.
    F5I10.14; F5I10.13; F5I10.12; F5I10.15; F5I10.11; F5I10.10; F5I10.9;
     F5I10.16; F5I10.17; F5I10.18; F5I10.8; F5I10.19; F5I10.20; F5I10.21;
     F5I10.7; F5I10.22; F5I10.6; F5I10.4; F5I10.5; F5I10.3; F5I10.2;
     F5I10.23; F5I10.24; F5I10.1.

==================== Updated DNA Sequences =====================

AC006424    AC006424   122836bp    DNA      PLN      15-OCT-1999
    Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete
     sequence.
    HTG.

AC006551    AC006551   107200bp    DNA      PLN      16-OCT-1999
    Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
     sequence.
    HTG.

AC007918    AC007918   115963bp    DNA      PLN      16-OCT-1999
    Arabidopsis thaliana chromosome 1 BAC F28J9 sequence, complete sequence.
    HTG.

AC009398    AC009398    98809bp    DNA      HTG      12-OCT-1999
    Arabidopsis thaliana chromosome 1 clone F20B24, WORKING DRAFT SEQUENCE, 2
     ordered pieces.
    HTG; HTGS_PHASE2.

AC009513    AC009513    81490bp    DNA      PLN      16-OCT-1999
    Arabidopsis thaliana chromosome 1 BAC F12P19 sequence, complete sequence.
    HTG.

AC009519    AC009519   113172bp    DNA      PLN      14-OCT-1999
    Genomic sequence for Arabidopsis thaliana BAC F1N19 from chromosome I,
     complete sequence.
    HTG.

AC009529    AC009529    82465bp    DNA      HTG      15-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T25F15, WORKING DRAFT
     SEQUENCE, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC010796    AC010796    90759bp    DNA      HTG      13-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F24J13, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC010852    AC010852    92087bp    DNA      HTG      15-OCT-1999
    Arabidopsis thaliana chromosome I clone TAMU-T12P18, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC011001    AC011001    91608bp    DNA      PLN      16-OCT-1999
    Arabidopsis thaliana chromosome I BAC F4H5 genomic sequence, complete
     sequence.
    HTG.

AC011020    AC011020    96374bp    DNA      HTG      23-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F12B7, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC011436    AC011436   111078bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F3L24, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC011437    AC011437   102003bp    DNA      HTG      12-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F7O18, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC011560    AC011560   121071bp    DNA      HTG      12-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F13M14, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC011620    AC011620   103322bp    DNA      HTG      22-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F18C1, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC011621    AC011621    94954bp    DNA      HTG      19-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F23H6, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC011622    AC011622    96546bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F24D7, WORKING DRAFT
     SEQUENCE, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC011623    AC011623    89204bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F24P17, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC011661    AC011661    85418bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome 1 clone T23J18, WORKING DRAFT SEQUENCE, 1
     ordered pieces.
    HTG; HTGS_PHASE2.

AC011663    AC011663   112136bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F1C9, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC011664    AC011664   104606bp    DNA      HTG      21-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F5A18, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC011665    AC011665   108661bp    DNA      HTG      20-OCT-1999
    Arabidopsis thaliana chromosome I clone TAMU-T6L1, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC009327  AC009327    89934bp    DNA      PLN      21-OCT-1999
    Arabidopsis thaliana chromosome III BAC T12J13 genomic sequence, complete
     sequence.
    HTG; T12J13.1; putative polynucleotide phosphorylase; T12J13.2; T12J13.3;
     T12J13.4; putative phosphoribosylanthranilate transferase; T12J13.5;
     putative peroxidase; T12J13.6; T12J13.7; T12J13.8; beta-glucosidase;
     T12J13.9; O-acetylserine (thiol) lyase; T12J13.10; T12J13.11; T12J13.12;
     putative ribosomal protein S2; T12J13.13; T12J13.14; T12J13.15;
     T12J13.16; T12J13.17; T12J13.18; putative phospholipase.

ATAC009400  AC009400    87937bp    DNA      PLN      16-OCT-1999
    Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence, complete
     sequence.
    HTG; F14P13.1; F14P13.2; F14P13.3; putative glycerol-3-phosphate
     dehydrogenase; F14P13.4; putative RNA binding protein; F14P13.5;
     putative ATPase; F14P13.6; putative phenylalanine ammonia-lyase;
     F14P13.7; transcription initiation factor IIB (TFIIB); F14P13.8;
     F14P13.9; kinesin-like protein; F14P13.10; F14P13.11; F14P13.12;
     putative fatty acid elongase 3-ketoacyl-CoA synthase 1; F14P13.13;
     putative DNA gyrase subunit B; F14P13.14; F14P13.15; F14P13.16;
     F14P13.17; lycopene beta cyclase; F14P13.18; putative
     cytoskeleton-associated protein; F14P13.19; F14P13.20; F14P13.21;
     calmodulin-like protein; F14P13.22; putative kinesin-like centromere
     protein; F14P13.23.

ATAC009755  AC009755    94369bp    DNA      PLN      14-OCT-1999
    Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete
     sequence.
    HTG; F14P3.1; F14P3.2; putative N2,N2-dimethylguanosine tRNA
     methyltransferase; F14P3.3; tRNA-Ile; F14P3.4; floral homeotic protein
     AGL4; F14P3.5; F14P3.6; F14P3.7; putative NADPH-ferrihemoprotein
     reductase; F14P3.8; putative translation initiation factor EIF-2B
     epsilon subunit; F14P3.9; F14P3.10; putative auxin-independent growth
     promoter; F14P3.11; F14P3.12; reversibly glycosylated polypeptide-1;
     F14P3.13; F14P3.14; F14P3.15; F14P3.16; putative ribosomal protein L39;
     F14P3.17; F14P3.18; F14P3.19; F14P3.20; F14P3.21; F14P3.22; putative
     protein kinase.

ATAC009853  AC009853    90112bp    DNA      PLN      12-OCT-1999
    Arabidopsis thaliana chromosome III BAC F21O3 genomic sequence, complete
     sequence.
    HTG; F21O3.1; putative translation initiation factor EIF-2B beta subunit,
     3' partial; F21O3.2; F21O3.3; putative glucan endo-1-3-beta-glucosidase;
     F21O3.4; F21O3.5; F21O3.6; F21O3.7; F21O3.8; F21O3.9; F21O3.10;
     F21O3.11; F21O3.12; putative GTP-binding protein; F21O3.13; putative
     asparaginyl-tRNA synthetase; F21O3.14; F21O3.15; F21O3.16; putative
     5B-anther specific protein; F21O3.17; F21O3.18; F21O3.19; F21O3.20;
     putative calmodulin; F21O3.21; F21O3.22; F21O3.23; F21O3.24; F21O3.25;
     F21O3.26; F21O3.27; F21O3.28.

ATAC009918  AC009918    45173bp    DNA      PLN      13-OCT-1999
    Arabidopsis thaliana chromosome III BAC T19F11 genomic sequence, complete
     sequence.
    HTG; T19F11.1; T19F11.2; T19F11.3; putative 2-cys peroxiredoxin;
     T19F11.4; T19F11.5; T19F11.6; T19F11.7; digalactosyldiacylglycerol
     synthase; T19F11.8; T19F11.9; T19F11.10; T19F11.11; lysyl-tRNA
     synthetase; T19F11.12.

ATAC009992  AC009992    96583bp    DNA      PLN      21-OCT-1999
    Arabidopsis thaliana chromosome III BAC T4P3 genomic sequence, complete
     sequence.
    HTG; T4P3.1; T4P3.2; T4P3.3; T4P3.4; T4P3.5; T4P3.6; T4P3.7; T4P3.8;
     putative actin; T4P3.9; T4P3.10; T4P3.11; T4P3.12; T4P3.13; T4P3.14;
     T4P3.15; T4P3.16; T4P3.17; T4P3.18; T4P3.19; putative reverse
     transcriptase, 5' partial.

ATAC010676  AC010676    58448bp    DNA      PLN      22-OCT-1999
    Arabidopsis thaliana chromosome III BAC T22N4 genomic sequence, complete
     sequence.
    HTG; T22N4.1; T22N4.2; putative peptide transporter; T22N4.3; putative
     protein transport protein SEC13; T22N4.4; T22N4.5; T22N4.6; T22N4.7;
     putative protein kinase; T22N4.8; T22N4.9; putative porin; T22N4.10;
     putative pectate lyase; T22N4.11; putative aldose 1-epimerase, 3'
     partial.

ATAC010797  AC010797    89154bp    DNA      PLN      21-OCT-1999
    Arabidopsis thaliana chromosome III BAC F28J7 genomic sequence, complete
     sequence.
    HTG; F28J7.1; F28J7.2; F28J7.3; tRNA-Pro; F28J7.4; F28J7.5; F28J7.6;
     F28J7.7; F28J7.8; F28J7.9; putative amino acid permease; F28J7.10;
     F28J7.11; F28J7.12; putative ribosomal protein L13; F28J7.13; putative
     ribosome recycling factor; F28J7.14; F28J7.15; putative adenylate
     kinase; F28J7.16; F28J7.37; putative protein kinase; F28J7.18; putative
     D-ribulose-5-phosphate 3-epimerase; F28J7.19; F28J7.20; F28J7.21;
     F28J7.22; F28J7.23; putative cytochrome P450; F28J7.38; putative sulfite
     oxidase; F28J7.25; F28J7.26; F28J7.27; F28J7.28; F28J7.29; F28J7.30;
     F28J7.36; F28J7.32; F28J7.33; putative glutaredoxin; F28J7.34; F28J7.35;
     putative aspartate kinase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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