New Arabidopsis DNA 25-Oct-1999
AtDB Project
arabidopsis-seq at genome.stanford.edu
Mon Oct 25 18:48:04 EST 1999
====================== New DNA Sequences =======================
A72448 A72448 350bp DNA PAT 15-OCT-1999
Sequence 35 from Patent WO9530747.
A74281 A74281 1735bp DNA PAT 15-OCT-1999
Sequence 3 from Patent WO9401564.
A75959 A75959 2114bp DNA PAT 19-OCT-1999
Sequence 1 from Patent WO9321326.
ARA B; NADPH CYTOCHROME P450 REDUCTASE.
A75961 A75961 2423bp DNA PAT 19-OCT-1999
Sequence 3 from Patent WO9321326.
ARA C; NADPH CYTOCHROME P450 REDUCTASE.
A78951 A78951 138bp DNA PAT 20-OCT-1999
Sequence 5 from Patent WO9829554.
A78957 A78957 1704bp DNA PAT 20-OCT-1999
Sequence 11 from Patent WO9829554.
PROTOPORPHYRINOGEN OXIDASE.
A79355 A79355 2163bp DNA PAT 20-OCT-1999
Sequence 4 from Patent WO9746692.
A79358 A79358 35bp DNA PAT 20-OCT-1999
Sequence 7 from Patent WO9746692.
A80158 A80158 350bp DNA PAT 20-OCT-1999
Sequence 35 from Patent WO9530748.
AB033294 AB033294 6468bp DNA PLN 16-OCT-1999
Arabidopsis thaliana DFR gene for dihydroflavonol 4-reductase, complete
cds.
DFR; dihydroflavonol 4-reductase.
AC011698 AC011698 68163bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome III clone TAMU-T11I18, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC011708 AC011708 82316bp DNA HTG 22-OCT-1999
Arabidopsis thaliana chromosome III clone TAMU-T7M13, WORKING DRAFT
SEQUENCE, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC011713 AC011713 111198bp DNA HTG 13-OCT-1999
Arabidopsis thaliana chromosome 1 clone F23A5, WORKING DRAFT SEQUENCE, 2
ordered pieces.
HTG; HTGS_PHASE2.
AC011717 AC011717 119931bp DNA HTG 23-OCT-1999
Arabidopsis thaliana chromosome I clone IGF-F19K16, WORKING DRAFT
SEQUENCE, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC011765 AC011765 141876bp DNA HTG 23-OCT-1999
Arabidopsis thaliana chromosome I clone IGF-F1M20, WORKING DRAFT
SEQUENCE, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC011807 AC011807 79825bp DNA HTG 15-OCT-1999
Arabidopsis thaliana chromosome I clone F14J22, WORKING DRAFT SEQUENCE,
16 unordered pieces.
HTG; HTGS_PHASE1.
AC011808 AC011808 91339bp DNA HTG 15-OCT-1999
Arabidopsis thaliana chromosome I clone F19K19, WORKING DRAFT SEQUENCE, 6
unordered pieces.
HTG; HTGS_PHASE1.
AC011809 AC011809 107928bp DNA HTG 15-OCT-1999
Arabidopsis thaliana chromosome I clone F6A14, WORKING DRAFT SEQUENCE, 4
unordered pieces.
HTG; HTGS_PHASE1.
AC011810 AC011810 88795bp DNA HTG 15-OCT-1999
Arabidopsis thaliana chromosome I clone T6J4, WORKING DRAFT SEQUENCE, 13
unordered pieces.
HTG; HTGS_PHASE1.
AC011914 AC011914 102286bp DNA HTG 20-OCT-1999
Arabidopsis thaliana chromosome I clone IGF-F14K14, WORKING DRAFT
SEQUENCE, 6 unordered pieces.
HTG; HTGS_PHASE1.
AC011915 AC011915 80949bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome I clone TAMU-T26J14, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC012187 AC012187 86284bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome 1 clone F13K23, WORKING DRAFT SEQUENCE, 3
unordered pieces.
HTG; HTGS_PHASE1.
AC012188 AC012188 112998bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome 1 clone F14L17, WORKING DRAFT SEQUENCE, 4
unordered pieces.
HTG; HTGS_PHASE1.
AC012189 AC012189 78421bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome 1 clone T15D22, WORKING DRAFT SEQUENCE, 1
ordered pieces.
HTG; HTGS_PHASE2.
AC012190 AC012190 83856bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome 1 clone T22I11, WORKING DRAFT SEQUENCE, 3
unordered pieces.
HTG; HTGS_PHASE1.
AC012193 AC012193 102071bp DNA HTG 23-OCT-1999
Arabidopsis thaliana chromosome I clone TAMU-T32E8, WORKING DRAFT
SEQUENCE, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC012327 AC012327 95986bp DNA HTG 23-OCT-1999
Arabidopsis thaliana chromosome III clone TAMU-T14A11, WORKING DRAFT
SEQUENCE, 5 unordered pieces.
HTG; HTGS_PHASE1.
AC012328 AC012328 103845bp DNA HTG 23-OCT-1999
Arabidopsis thaliana chromosome III clone TAMU-T17B22, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC012329 AC012329 82406bp DNA HTG 23-OCT-1999
Arabidopsis thaliana chromosome I clone TAMU-T1G12, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AF134485 AF134485 1005bp mRNA PLN 21-OCT-1999
Arabidopsis thaliana cytidine deaminase 1 (cda1) mRNA, partial cds.
cda1; cytidine deaminase 1.
AF134486 AF134486 828bp mRNA PLN 21-OCT-1999
Arabidopsis thaliana clone 149H23T7 cytidine deaminase 1 (cda1) mRNA,
partial cds.
cda1; cytidine deaminase 1.
AF134487 AF134487 1161bp mRNA PLN 21-OCT-1999
Arabidopsis thaliana cytidine deaminase 1 (cda1) mRNA, complete cds.
cda1; cytidine deaminase 1.
AF177672 AF177672 2277bp DNA PLN 16-OCT-1999
Arabidopsis thaliana cultivar Columbia receptor-like protein CLAVATA2
(CLV2) gene, complete cds.
CLV2; receptor-like protein CLAVATA2.
AF177673 AF177673 2163bp DNA PLN 16-OCT-1999
Arabidopsis thaliana cultivar Lansberg erecta receptor-like protein
CLAVATA2 (CLV2) gene, complete cds.
CLV2; receptor-like protein CLAVATA2.
AF177674 AF177674 2163bp DNA PLN 16-OCT-1999
Arabidopsis thaliana cultivar Wassilewskia receptor-like protein CLAVATA2
(CLV2) gene, complete cds.
CLV2; receptor-like protein CLAVATA2.
AF186847 AF186847 1134bp mRNA PLN 24-OCT-1999
Arabidopsis thaliana TIM17 (TIM17) mRNA, complete cds.
TIM17.
AF187317 AF187317 5815bp mRNA PLN 23-OCT-1999
Arabidopsis thaliana CAF protein (CAF) mRNA, complete cds.
CAF; CAF protein.
AP000599 AP000599 18284bp DNA PLN 15-OCT-1999
Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K9I22,
complete sequence.
HTG.
AP000600 AP000600 73859bp DNA PLN 15-OCT-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2, complete
sequence.
HTG.
AP000601 AP000601 9642bp DNA PLN 15-OCT-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJL14, complete
sequence.
HTG.
AP000602 AP000602 12106bp DNA PLN 15-OCT-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP17, complete
sequence.
HTG.
AP000603 AP000603 83287bp DNA PLN 15-OCT-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15, complete
sequence.
HTG.
AP000604 AP000604 63748bp DNA PLN 15-OCT-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6, complete
sequence.
HTG.
AP000605 AP000605 7150bp DNA PLN 15-OCT-1999
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSK20, complete
sequence.
HTG.
AP000606 AP000606 82360bp DNA PLN 15-OCT-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTO24, complete
sequence.
HTG.
AP000607 AP000607 49648bp DNA PLN 15-OCT-1999
Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone: T25O11,
complete sequence.
HTG.
ATH012758 AJ012758 943bp mRNA PLN 15-OCT-1999
Arabidopsis thaliana mRNA for nucleotide diphosphate kinase Ia.
NDP kinase; NDPK Ia gene; nucleotide diphosphate kinase Ia; NDPK Ia.
ATH250341 AJ250341 1944bp mRNA PLN 15-OCT-1999
Arabidopsis thaliana mRNA for beta-amylase enzyme (ct-bmy gene).
beta-amylase enzyme; ct-bmy gene; ct-bmy.
ATH250430 AJ250430 1823bp mRNA PLN 20-OCT-1999
Arabidopsis thaliana mRNA for pectin methylesterase (pme5 gene).
pectin methylesterase; pme5 gene; pme5.
ATJ00162 AJ001362 2411bp DNA PLN 21-OCT-1999
Arabidopsis thaliana promoter of monosaccharide transporter gene AtSTP2.
monosaccharide transporter; AtSTP2; monosaccharide tranporter.
ATJ00163 AJ001363 1817bp DNA PLN 21-OCT-1999
Arabidopsis thaliana promoter of monosaccharide transporter gene AtSTP3.
monosaccharide transporter; AtSTP3; monosaccharide tranporter.
F5I10 AF195115 111906bp DNA PLN 16-OCT-1999
Arabidopsis thaliana BAC F5I10.
F5I10.14; F5I10.13; F5I10.12; F5I10.15; F5I10.11; F5I10.10; F5I10.9;
F5I10.16; F5I10.17; F5I10.18; F5I10.8; F5I10.19; F5I10.20; F5I10.21;
F5I10.7; F5I10.22; F5I10.6; F5I10.4; F5I10.5; F5I10.3; F5I10.2;
F5I10.23; F5I10.24; F5I10.1.
==================== Updated DNA Sequences =====================
AC006424 AC006424 122836bp DNA PLN 15-OCT-1999
Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete
sequence.
HTG.
AC006551 AC006551 107200bp DNA PLN 16-OCT-1999
Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
sequence.
HTG.
AC007918 AC007918 115963bp DNA PLN 16-OCT-1999
Arabidopsis thaliana chromosome 1 BAC F28J9 sequence, complete sequence.
HTG.
AC009398 AC009398 98809bp DNA HTG 12-OCT-1999
Arabidopsis thaliana chromosome 1 clone F20B24, WORKING DRAFT SEQUENCE, 2
ordered pieces.
HTG; HTGS_PHASE2.
AC009513 AC009513 81490bp DNA PLN 16-OCT-1999
Arabidopsis thaliana chromosome 1 BAC F12P19 sequence, complete sequence.
HTG.
AC009519 AC009519 113172bp DNA PLN 14-OCT-1999
Genomic sequence for Arabidopsis thaliana BAC F1N19 from chromosome I,
complete sequence.
HTG.
AC009529 AC009529 82465bp DNA HTG 15-OCT-1999
Arabidopsis thaliana chromosome III clone TAMU-T25F15, WORKING DRAFT
SEQUENCE, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC010796 AC010796 90759bp DNA HTG 13-OCT-1999
Arabidopsis thaliana chromosome I clone IGF-F24J13, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC010852 AC010852 92087bp DNA HTG 15-OCT-1999
Arabidopsis thaliana chromosome I clone TAMU-T12P18, WORKING DRAFT
SEQUENCE, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC011001 AC011001 91608bp DNA PLN 16-OCT-1999
Arabidopsis thaliana chromosome I BAC F4H5 genomic sequence, complete
sequence.
HTG.
AC011020 AC011020 96374bp DNA HTG 23-OCT-1999
Arabidopsis thaliana chromosome I clone IGF-F12B7, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC011436 AC011436 111078bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F3L24, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC011437 AC011437 102003bp DNA HTG 12-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F7O18, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC011560 AC011560 121071bp DNA HTG 12-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F13M14, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC011620 AC011620 103322bp DNA HTG 22-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F18C1, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC011621 AC011621 94954bp DNA HTG 19-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F23H6, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC011622 AC011622 96546bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome I clone IGF-F24D7, WORKING DRAFT
SEQUENCE, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC011623 AC011623 89204bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F24P17, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC011661 AC011661 85418bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome 1 clone T23J18, WORKING DRAFT SEQUENCE, 1
ordered pieces.
HTG; HTGS_PHASE2.
AC011663 AC011663 112136bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F1C9, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC011664 AC011664 104606bp DNA HTG 21-OCT-1999
Arabidopsis thaliana chromosome I clone IGF-F5A18, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC011665 AC011665 108661bp DNA HTG 20-OCT-1999
Arabidopsis thaliana chromosome I clone TAMU-T6L1, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
ATAC009327 AC009327 89934bp DNA PLN 21-OCT-1999
Arabidopsis thaliana chromosome III BAC T12J13 genomic sequence, complete
sequence.
HTG; T12J13.1; putative polynucleotide phosphorylase; T12J13.2; T12J13.3;
T12J13.4; putative phosphoribosylanthranilate transferase; T12J13.5;
putative peroxidase; T12J13.6; T12J13.7; T12J13.8; beta-glucosidase;
T12J13.9; O-acetylserine (thiol) lyase; T12J13.10; T12J13.11; T12J13.12;
putative ribosomal protein S2; T12J13.13; T12J13.14; T12J13.15;
T12J13.16; T12J13.17; T12J13.18; putative phospholipase.
ATAC009400 AC009400 87937bp DNA PLN 16-OCT-1999
Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence, complete
sequence.
HTG; F14P13.1; F14P13.2; F14P13.3; putative glycerol-3-phosphate
dehydrogenase; F14P13.4; putative RNA binding protein; F14P13.5;
putative ATPase; F14P13.6; putative phenylalanine ammonia-lyase;
F14P13.7; transcription initiation factor IIB (TFIIB); F14P13.8;
F14P13.9; kinesin-like protein; F14P13.10; F14P13.11; F14P13.12;
putative fatty acid elongase 3-ketoacyl-CoA synthase 1; F14P13.13;
putative DNA gyrase subunit B; F14P13.14; F14P13.15; F14P13.16;
F14P13.17; lycopene beta cyclase; F14P13.18; putative
cytoskeleton-associated protein; F14P13.19; F14P13.20; F14P13.21;
calmodulin-like protein; F14P13.22; putative kinesin-like centromere
protein; F14P13.23.
ATAC009755 AC009755 94369bp DNA PLN 14-OCT-1999
Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete
sequence.
HTG; F14P3.1; F14P3.2; putative N2,N2-dimethylguanosine tRNA
methyltransferase; F14P3.3; tRNA-Ile; F14P3.4; floral homeotic protein
AGL4; F14P3.5; F14P3.6; F14P3.7; putative NADPH-ferrihemoprotein
reductase; F14P3.8; putative translation initiation factor EIF-2B
epsilon subunit; F14P3.9; F14P3.10; putative auxin-independent growth
promoter; F14P3.11; F14P3.12; reversibly glycosylated polypeptide-1;
F14P3.13; F14P3.14; F14P3.15; F14P3.16; putative ribosomal protein L39;
F14P3.17; F14P3.18; F14P3.19; F14P3.20; F14P3.21; F14P3.22; putative
protein kinase.
ATAC009853 AC009853 90112bp DNA PLN 12-OCT-1999
Arabidopsis thaliana chromosome III BAC F21O3 genomic sequence, complete
sequence.
HTG; F21O3.1; putative translation initiation factor EIF-2B beta subunit,
3' partial; F21O3.2; F21O3.3; putative glucan endo-1-3-beta-glucosidase;
F21O3.4; F21O3.5; F21O3.6; F21O3.7; F21O3.8; F21O3.9; F21O3.10;
F21O3.11; F21O3.12; putative GTP-binding protein; F21O3.13; putative
asparaginyl-tRNA synthetase; F21O3.14; F21O3.15; F21O3.16; putative
5B-anther specific protein; F21O3.17; F21O3.18; F21O3.19; F21O3.20;
putative calmodulin; F21O3.21; F21O3.22; F21O3.23; F21O3.24; F21O3.25;
F21O3.26; F21O3.27; F21O3.28.
ATAC009918 AC009918 45173bp DNA PLN 13-OCT-1999
Arabidopsis thaliana chromosome III BAC T19F11 genomic sequence, complete
sequence.
HTG; T19F11.1; T19F11.2; T19F11.3; putative 2-cys peroxiredoxin;
T19F11.4; T19F11.5; T19F11.6; T19F11.7; digalactosyldiacylglycerol
synthase; T19F11.8; T19F11.9; T19F11.10; T19F11.11; lysyl-tRNA
synthetase; T19F11.12.
ATAC009992 AC009992 96583bp DNA PLN 21-OCT-1999
Arabidopsis thaliana chromosome III BAC T4P3 genomic sequence, complete
sequence.
HTG; T4P3.1; T4P3.2; T4P3.3; T4P3.4; T4P3.5; T4P3.6; T4P3.7; T4P3.8;
putative actin; T4P3.9; T4P3.10; T4P3.11; T4P3.12; T4P3.13; T4P3.14;
T4P3.15; T4P3.16; T4P3.17; T4P3.18; T4P3.19; putative reverse
transcriptase, 5' partial.
ATAC010676 AC010676 58448bp DNA PLN 22-OCT-1999
Arabidopsis thaliana chromosome III BAC T22N4 genomic sequence, complete
sequence.
HTG; T22N4.1; T22N4.2; putative peptide transporter; T22N4.3; putative
protein transport protein SEC13; T22N4.4; T22N4.5; T22N4.6; T22N4.7;
putative protein kinase; T22N4.8; T22N4.9; putative porin; T22N4.10;
putative pectate lyase; T22N4.11; putative aldose 1-epimerase, 3'
partial.
ATAC010797 AC010797 89154bp DNA PLN 21-OCT-1999
Arabidopsis thaliana chromosome III BAC F28J7 genomic sequence, complete
sequence.
HTG; F28J7.1; F28J7.2; F28J7.3; tRNA-Pro; F28J7.4; F28J7.5; F28J7.6;
F28J7.7; F28J7.8; F28J7.9; putative amino acid permease; F28J7.10;
F28J7.11; F28J7.12; putative ribosomal protein L13; F28J7.13; putative
ribosome recycling factor; F28J7.14; F28J7.15; putative adenylate
kinase; F28J7.16; F28J7.37; putative protein kinase; F28J7.18; putative
D-ribulose-5-phosphate 3-epimerase; F28J7.19; F28J7.20; F28J7.21;
F28J7.22; F28J7.23; putative cytochrome P450; F28J7.38; putative sulfite
oxidase; F28J7.25; F28J7.26; F28J7.27; F28J7.28; F28J7.29; F28J7.30;
F28J7.36; F28J7.32; F28J7.33; putative glutaredoxin; F28J7.34; F28J7.35;
putative aspartate kinase.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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