From sujita from skhot.net Sun Jun 7 00:57:35 2009 From: sujita from skhot.net (Sujita Purushothaman) Date: Sun Jun 7 11:39:50 2009 Subject: [Bio-software] Data Structure for protein Message-ID: <4A2B56CF.10102@skhot.net> Hi, I'm writing a program which has to hold information about the 3d structure of a protein, and make modifications to the coordinates. I was wondering if anyone can comment on suitable data structures that can be used for this, pros and cons? Thanks in advance! -Sujita From seth from seth-johnson.net Sun Jun 7 12:32:24 2009 From: seth from seth-johnson.net (Seth Johnson) Date: Sun Jun 7 12:47:26 2009 Subject: [Bio-software] RE: Data structure for protein Message-ID: <4a2bf99a.85c2f10a.62bd.ffffc483@mx.google.com> Your best bet is PDB format. Google it up, it gives coordinates and such for each aa. -----Original Message----- Message: 1 Date: Sun, 07 Jun 2009 06:57:35 +0100 From: Sujita Purushothaman Subject: [Bio-software] Data Structure for protein To: bio-soft@net.bio.net Message-ID: <4A2B56CF.10102@skhot.net> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Hi, I'm writing a program which has to hold information about the 3d structure of a protein, and make modifications to the coordinates. I was wondering if anyone can comment on suitable data structures that can be used for this, pros and cons? Thanks in advance! -Sujita From hxiang.swu from gmail.com Wed Jun 17 22:14:29 2009 From: hxiang.swu from gmail.com (Heng Xiang) Date: Thu Jun 18 06:28:07 2009 Subject: [Bio-software] HCA-PLOT software Message-ID: Hello, Would you mind telling me if there are HCA-Plot softwares runing under Win or Unix, and where I can download them. Thanks very much. Heng xiang -- Heng Xiang The Key Sericultural Laboratory of Agricultural Ministry of China, Southwest University, Chongqing 400715, China. Tel: +86 23 68251088 Fax: +86 23 68251128 E-mail: hxiang.swu@gmail.com From yanlinlin82 from gmail.com Thu Jun 18 07:21:36 2009 From: yanlinlin82 from gmail.com (Linlin Yan) Date: Thu Jun 18 09:53:53 2009 Subject: [Bio-software] Re: HCA-PLOT software References: Message-ID: <24d37b5a-4e52-4a69-9bcf-edc2bb86be77@k17g2000prn.googlegroups.com> Did you mean the "Hydrophobic Cluster Analysis"? I got the following link from ExPASy's Tools page: http://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py?form=HCA On Jun 18, 11:14?am, Heng Xiang wrote: > Hello, > > Would you mind telling me if there are HCA-Plot softwares runing under Win > or Unix, and where I can download them. Thanks very much. > Heng xiang > > -- > Heng Xiang > > The Key Sericultural Laboratory of Agricultural Ministry of China, > ?Southwest University, Chongqing 400715, China. > Tel: +86 23 68251088 > Fax: +86 23 68251128 > E-mail: hxiang....@gmail.com From info from korilog.com Thu Jun 18 08:34:52 2009 From: info from korilog.com (Korilog Information Desk) Date: Thu Jun 18 09:54:05 2009 Subject: [Bio-software] HCA-PLOT software In-Reply-To: References: Message-ID: <4A3A427C.3000809@korilog.com> Hi, as far as I know, there is no downloadable tool. However, have a look at this URL: http://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py?form=HCA Regards, Patrick -- Korilog SARL BP 34, 56190 Muzillac, France Phone: +33 (0)960 368 038 Fax: +33 (0)297 428 820 web: www.korilog.com Heng Xiang a ?crit : > Hello, > > Would you mind telling me if there are HCA-Plot softwares runing under Win > or Unix, and where I can download them. Thanks very much. > Heng xiang > From rwmd1 from NOSPAMle.ac.uk Mon Jun 22 04:00:52 2009 From: rwmd1 from NOSPAMle.ac.uk (Astala Vista) Date: Mon Jun 22 08:25:05 2009 Subject: [Bio-software] DNA sequence editor Message-ID: In common with many other sites, we are no longer providing GCG to our users as it is increasingly more difficult to support. However, we need a simple DNA sequence editor replacement for GCG SeqEd. We are running openSuSE 11.1. Any suggestions? Many thanks, Raymond