From jprudhomme from healthtech.com Thu Mar 12 07:04:15 2009 From: jprudhomme from healthtech.com (JPrudhomme) Date: Thu Mar 12 10:08:23 2009 Subject: [Bio-software] Conference: Structure-Based Design, June 4-5, Cambridge, MA Message-ID: <691f7d47-5bfd-43f8-829b-59886e333daf@t3g2000yqa.googlegroups.com> Dear Group, If you have an interest in the above topic, please consider going to my conference: www.healthtech.com/SBD Regards, James Prudhomme Cambridge Healthtech Institute jprudhomme@healthtech.com From clements from nescent.org Mon Mar 16 15:51:33 2009 From: clements from nescent.org (Dave Clements) Date: Mon Mar 16 16:15:28 2009 Subject: [Bio-software] 2009 GMOD Summer Schools - Americas & Europe In-Reply-To: References: Message-ID: We are now accepting applications for the 2009 GMOD Summer Schools: Americas, 16-19 July ?- National Evolutionary Synthesis Center (NESCent), Durham, NC, USA ?- Student tuition is free, thanks to NIH grant 1R01HG004483-01. ?- http://gmod.org/wiki/2009_GMOD_Summer_School_-_Americas Europe, 3-6 August ?- University of Oxford, Oxford, United Kingdom ?- Part of GMOD Europe 2009, which includes the next GMOD Meeting ?- Student tuition is ?95 ?- http://gmod.org/wiki/2009_GMOD_Summer_School_-_Europe GMOD (http://gmod.org/) is a collection of interoperable open source software components for managing, visualizing, annotating and integrating biological, mostly genomic, data. ?GMOD is also a community of developers and users dealing with similar challenges. GMOD is used in diverse contexts, with both emerging and established model organisms. GMOD Summer Schools (http://gmod.org/wiki/GMOD_Summer_School) introduce new GMOD users to the GMOD project and feature several days of hands-on training on how to install, configure and administer GMOD tools. The courses includes training on several GMOD components: ?* GBrowse - the widely used Generic Genome Browser ?* Chado - a modular and extensible database schema for biological data ?* Apollo - genome annotation editor ?* BioMart - biological data warehouse system ?* GBrowse_syn - a GBrowse based synteny viewer ?* JBrowse - a brand new Web 2.0 genome browser ?* Artemis-Chado Integration (Europe only) ?* MAKER - Genome annotation pipeline (Americas only) ?* Tripal - Web front end for Chado (Americas only) ***Please submit an application by the end of 6 April 2009, if you are interested in attending. *** Enrollment is limited to 25 students in each course. ?If applications exceed capacity (and we expect they will) then applicants will be picked based on the strength of their application. ?Applicants will be notified of their admission status in mid-April. Thanks, Dave Clements GMOD Help Desk help@gmod.org http://gmod.org/wiki/2009_GMOD_Summer_School_-_Americas http://gmod.org/wiki/2009_GMOD_Summer_School_-_Europe http://gmod.org/wiki/GMOD_Europe_2009 From singhvarunv from gmail.com Sat Mar 21 07:52:11 2009 From: singhvarunv from gmail.com (Varun Singh) Date: Sat Mar 21 13:41:52 2009 Subject: [Bio-software] Webplasmid Message-ID: <43be8705-4d26-4301-8b97-254a57cab269@e35g2000yqc.googlegroups.com> Try webplasmid at www.webplasmid.webs.com Regards, Varun Singh From clements from nescent.org Sun Mar 29 23:32:49 2009 From: clements from nescent.org (Dave Clements) Date: Mon Mar 30 23:43:30 2009 Subject: [Bio-software] Re: 2009 GMOD Summer Schools - Americas & Europe In-Reply-To: References: Message-ID: ***The application deadline for both GMOD summer schools is April 6, one week from now.*** GMOD Summer School - Americas will be held 16-19 July at the National Evolutionary Synthesis Center (NESCent), in Durham, NC, USA. Student tuition is free. See http://gmod.org/wiki/2009_GMOD_Summer_School_-_Americas GMOD Summer School - Europe will be held 3-6 August at the University of Oxford, in Oxford, UK. This is a part of GMOD Europe 2009, which includes the next GMOD Meeting. Student tuition is ?95. See http://gmod.org/wiki/2009_GMOD_Summer_School_-_Europe Please contact the GMOD Help Desk (help@gmod.org) if you have questions. We hope to see you in Durham or Oxford, Dave C. On Mon, Mar 16, 2009 at 1:51 PM, Dave Clements wrote: > We are now accepting applications for the 2009 GMOD Summer Schools: > > Americas, 16-19 July > ?- National Evolutionary Synthesis Center (NESCent), Durham, NC, USA > ?- Student tuition is free, thanks to NIH grant 1R01HG004483-01. > ?- http://gmod.org/wiki/2009_GMOD_Summer_School_-_Americas > > Europe, 3-6 August > ?- University of Oxford, Oxford, United Kingdom > ?- Part of GMOD Europe 2009, which includes the next GMOD Meeting > ?- Student tuition is ?95 > ?- http://gmod.org/wiki/2009_GMOD_Summer_School_-_Europe > > GMOD (http://gmod.org/) is a collection of interoperable open source > software components for managing, visualizing, annotating and > integrating biological, mostly genomic, data. ?GMOD is also a > community of developers and users dealing with similar challenges. > GMOD is used in diverse contexts, with both emerging and established > model organisms. > > GMOD Summer Schools (http://gmod.org/wiki/GMOD_Summer_School) > introduce new GMOD users to the GMOD project and feature several days > of hands-on training on how to install, configure and administer GMOD > tools. > > The courses includes training on several GMOD components: > ?* GBrowse - the widely used Generic Genome Browser > ?* Chado - a modular and extensible database schema for biological data > ?* Apollo - genome annotation editor > ?* BioMart - biological data warehouse system > ?* GBrowse_syn - a GBrowse based synteny viewer > ?* JBrowse - a brand new Web 2.0 genome browser > ?* Artemis-Chado Integration (Europe only) > ?* MAKER - Genome annotation pipeline (Americas only) > ?* Tripal - Web front end for Chado (Americas only) > > ***Please submit an application by the end of 6 April 2009, if you are > interested in attending. *** > > Enrollment is limited to 25 students in each course. ?If applications > exceed capacity (and we expect they will) then applicants will be > picked based on the strength of their application. ?Applicants will be > notified of their admission status in mid-April. > > Thanks, > > Dave Clements > GMOD Help Desk > help@gmod.org > > http://gmod.org/wiki/2009_GMOD_Summer_School_-_Americas > http://gmod.org/wiki/2009_GMOD_Summer_School_-_Europe > http://gmod.org/wiki/GMOD_Europe_2009 >