tabulated mismatches from an alignment

Xavier Cousin cousin at ensam.inra.fr
Thu Jul 9 10:53:54 EST 1998


Dear all, I'm looking for a program (running preferentialy on Mac or PC)
creating a table of mismatches observed in an alignment

To be clear :

seq 1 ATGCATGCATGC
seq 2 ATTCATCCTACG

      from

     A C G T
   A - 0 0 1
to C 0 - 2 0
   G 0 1 - 0
   T 1 0 1 -

I know I can write a little perl script but the program is to be used
without imstallation of perl on the computer (by somebody who doesn't
know how to do this).

Thanks for your answers

Sincerly,

Xavier Cousin

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

    Xavier Cousin                     cousin at ensam.inra.fr

    INRA - DCC                        tel. (33) 04 99 61 28 14
    2, place Pierre Viala             fax  (33) 04 67 54 56 94
    34060 Montpellier Cedex 1

    ESTHER URL http://meleze.ensam.inra.fr/cholinesterase/

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

-- 

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

    Xavier Cousin                     cousin at ensam.inra.fr

    INRA - DCC                        tel. (33) 04 99 61 28 14
    2, place Pierre Viala             fax  (33) 04 67 54 56 94
    34060 Montpellier Cedex 1

    ESTHER URL http://meleze.ensam.inra.fr/cholinesterase/

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~




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