Terminators prediction program

Guy Perriere perriere at biomserv.univ-lyon1.fr
Mon Oct 26 04:08:59 EST 1998


I'm in search of prokaryotic transcription terminators prediction
programs. I looked at different index of services in bioinformatics,
but I found nothing related to this topic. The terminators I'm
interested in are the rho-independant ones, ie those with a G-C rich
stem-loop structure followed by a polyU, like this one:

                              U C
                             U   G
                              G-C
                              A-U
                              C-G
                              G-C
                              C-G
                              C-G
                     5'-CCCACAG CAUUUU-3'

Does anybody knows where I can find this kind of program? I have
the paper published by Brendel and Trifonov (1984) in NAR but I
suppose that more recent algorithms must have been published.

Thanks,

--
Guy Perriere - Laboratoire BGBP - Universite Claude Bernard Lyon 1
  43, bd du 11 Novembre 1918 - 69622 Villeurbanne Cedex - France
       http://pbil.univ-lyon1.fr/members/perriere/guy.html






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