EST clustering

laminaria.EST est at sb-roscoff.fr
Thu May 20 08:03:28 EST 1999


_________________________
Venky,

Take a look at a program called tlcluster. It was developed here at the
University of Iowa, and was designed specifically for clustering ESTs.
It is available for download from 
http://ratest.eng.uiowa.edu/pubsoft/software.html.

Tvenkatesh at synapticcorp.com wrote:
> 
> Dear All
> I am looking for EST clustering software. I would appreciate any
> suggestions.
___________________________

Venky,

free for UNIX:
TIGR (the institute for genomic research) has produced tigr-assembler which can assemble EST.
phrap from the phred/phrap/consed package
Acembly with the ACEDB database
The last two need special setings.

I am sure there are many other that I do not know of :-)

Florent Crepineau
Station Biologique de Roscoff.
France




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