From me from adomain.no Wed Jul 8 13:42:39 2009 From: me from adomain.no (dawe) Date: Wed Jul 8 14:00:20 2009 Subject: [Bio-software] Re: DNA sequence editor References: Message-ID: <1j2jytk.639xtqhn7kmwN%me@adomain.no> Astala Vista wrote: > In common with many other sites, we are no longer providing GCG to our > users as it is increasingly more difficult to support. However, we need > a simple DNA sequence editor replacement for GCG SeqEd. > > We are running openSuSE 11.1. Any suggestions? If you find any, please let me know. Meanwhile you may try ApE: which is multiplatform From pmr from ebi.ac.uk Thu Jul 9 05:41:16 2009 From: pmr from ebi.ac.uk (Peter Rice) Date: Thu Jul 9 08:35:09 2009 Subject: [Bio-software] Re: DNA sequence editor In-Reply-To: References: Message-ID: <4A55C94C.2030505@ebi.ac.uk> dawe wrote: > Astala Vista wrote: > >> In common with many other sites, we are no longer providing GCG to our >> users as it is increasingly more difficult to support. However, we need >> a simple DNA sequence editor replacement for GCG SeqEd. >> >> We are running openSuSE 11.1. Any suggestions? I am interested in adding something to EMBOSS, but afraid of the effort involved if it needs significant further development. I spent 2 solid years inside GCG's SeqEd converting it into an EMBL/GenBank/SwissProt feature table editor for EGCG. > If you find any, please let me know. > Meanwhile you may try ApE: > > > > which is multiplatform Useful to see a plasmid editor. What is the license for ApE? regards, Peter Rice From clements from nescent.org Fri Jul 17 23:02:31 2009 From: clements from nescent.org (Dave Clements) Date: Sat Jul 18 13:31:18 2009 Subject: [Bio-software] GMOD Community Meeting, 6-7 August, 2009, Oxford UK In-Reply-To: References: Message-ID: There will be a GMOD Community Meeting, 6-7 August, 2009 at the University of Oxford, in Oxford, UK. GMOD (http://gmod.org) is a collection of interoperable, open-source software components for managing, visualizing, annotating, and sharing biological data. GMOD is also a community of users and developers addressing common challenges with their biological data. The popularity of next generation sequencing and other high-throughput methods has made this GMOD meeting particularly timely. GMOD meetings are an excellent opportunity to learn best practices from other researchers, to meet GMOD users and developers, and to learn and affect what is coming in the project. As with previous meetings, there will be a mixture of project talks, component-focused talks, and user talks. Registration for the meeting is now open and space is available on a first come, first served basis. Attendance is limited to the first 55 people to register. The meeting cost is ?50. See http://gmod.org/wiki/August_2009_GMOD_Meeting to register for more. Please join us in Oxford this August. Cheers, Dave Clements GMOD Help Desk -- Register now for the August GMOD Meeting: http://gmod.org/wiki/August_2009_GMOD_Meeting