Newly Mapped SSRs
Mary Polacco
maryp at teosinte.agron.missouri.edu
Fri Aug 4 14:23:21 EST 2000
New SSRs
The Missouri Maize Project has released 116 newly mapped
SSR markers to MaizeDB, see below table.
Note: Some primer pairs were designed using the TIGR EST assemblies or
'contigs' and
for these, the below table includes a "TIGR" TC# which you may use to
lookup up the
contig sequence, clone information, and sequence homology where
available.
When our main WWW server goes back online (see previous bulletin),
access to TIGR, GenBank and MaizeDB details are provided
directly from tables linked to this page:
http://www.agron.missouri.edu/ssr.html
In the interim, you may go directly to the TIGR site:
http://www.tigr.org/tdb/zmgi/searching/reports.html
or to one of the main 'GenBank' sites:
US http://www3.ncbi.nlm.nih.gov/Entrez/
EMBL http://www.ebi.ac.uk/cgi-bin/emblfetch
DDBJ http://ftp2.ddbj.nig.ac.jp:8000/getstart-e.html
Have a great weekend,
mary
file:/home/maryp/Jul00SSR
--
Mary Polacco, Curator MaizeDB
PolaccoM at missouri.edu
+1 573-884-7873 (phone); -7850 (fax)
SSR Bins GenBank TIGR PrimerF
PrimerR
---------- -------------------- ------------ ----------
------------------------------ ------------------------------
umc1685 1.01
TAGTTTGAGGGATCAAGAACCACC GCTCAAAGGCAAGGCAGTATTTTA
umc1727 1.01 AW574491
GGCTGATCTTCTCCGCTTTTAAC AGGTACAGGTACAAGGCCCAGTC
umc1711 1.02 AW600474
TAGGTTACTCCACAAACAATGGCA TTGTGTGGTGGCAAGTTTATATGC
umc1701 1.03 TC16255
GCGGCAGTACAACACGTAACAATA CGCCAATAAACTGGAGGATAAGAA
umc1770 1.04- 1.05 AW330630
GAGGGATCATGGCTCTCTTCC GTCCATCATCAGCCTGTCACC
umc1689 1.05 TC13428
GAGGCGGAGGAGGAACACAG GAACGAGTAGGGCAGCGTCAG
umc1703 1.05 TC12560
ATTTTCTTGCTCACGTTCACTTCC TAACGGCAGCATTACATTTCTTGA
umc1734 1.05 AW600354
TTGTGCATTTTGCAGAAACTAGGA AGTACTTGTCGGTGGAGACTGGAG
umc1709 1.06 AW566357
ATACGTAGCACCTCCAGGTAGCAG CAGGTACAACGGATGAGGCAG
umc1748 1.06 AW506669
GTGCACGTCATCATAATCATCTCC CTTCTTTCCCATCATGTTTTCGTT
umc1754 1.06 AW455704
ATAGGGATCGACCCGTTCGT AATATCTCCGATCCACCAACAAAA
umc1706 1.07 TC16745
ATCGAGAGGGGTAAATAAGGACGA ACCAACCACGAGGCGATGTA
umc1715 1.09 AW562781
TTCATTGGGTCTCTAGCCAAGAAG GGGGAGTCACAGATCTCATCAACT
umc1726 1.10 AF123535
GATGAGGAAGAAAAGGGAAAAGGA AGACTCAACCCTAACCCTAATGGG
umc1737 1.10 AW498363
ATGCTTCTCTTCAGAAGCCATCC TAGCTAGGTAGTGATGTGCGTGCT
umc1774 1.10 A85269
ATGGGACTATGCATGGTATTTTGG TACACCATACGTCACCAGGTTCAC
umc1744 1.11 AW519952
ATGAAGCTGGCTGATACGGAAT CGAGCCCTTAATTAGTTCTCGGTT
umc1725 1.12 AW600661
CTACGGCCAGAGTATCGGTCAC TATGGTGGGAGAGACGACAGGTAT
umc1797 1.12
TCAAGTGAAATGCATAGCTTGCTC ACTGTTGGTAAACCCTGCATGACT
umc1756 2.02 AW438392
ATCTCAGGTACTCTGCCTACGGG AACAGAGGGTAGCTTGTGGCCT
umc1776 2.03 AF205806
AAGGCTCGTGGCATACCTGTAGT GCTGTACGTACGGGTGCAATG
umc1783 2.04 AW574496
ATTCATTCAGGTCGAACAAAGTGG GCTAGCTCGTCCACAATAAATGCT
umc1749 2.06 AW499261
CTTCATTTTTGTTGTTTCCCTGCT CGTAAAAGACTGGATTGCCAAAAG
umc1763 2.06 AW331727
TCTGCTGTCAAGGGATCGATTATT GGCAAGAGGTTTCTCACTGATGAT
umc1806 2.06
ATAAAGGTACCGTAGGGGGCTGA GAGAGCAAGAGGGAGAGAGCAAG
umc1745 2.08 AW506921
GGCACTTACAACTTCTTGCCTTCTT GCCGTCAAGCGATGATCAAG
umc1798 2.08
TATAACAACGTAGCAAAGCACGGG GATCGACCCTAATCGTCCTCCTAC
umc1704 2.09 TC13009
TTCACCGGGTAGTCCTTCTTACTG AAGTACGCTGTACGCAGGCAG
umc1736 2.09 AW461040
CCATCCACCACTAGAAAGAGAGGA TTAATCGATCGAGAGGTGCTTTTC
umc1696 2.10 TC16256
CTAGGGTTTAACCAACGGGGAG TAAGGAGAGGGTCGATGAACACAT
umc1746 3.00 AW506844
ACACGAGCATCCTACATCCTCCTA ACCTTGCCTGTCCTTCTTTCTCTT
umc1780 3.00 AW360685
CTGTCCCCAGGTTGCTGTAGTAGT CATGATGTACCCGCAACAAATG
umc1793 3.00 AW360685
TGCACACCCTTTATTGAATCATCA CGTATAAGCTTTTTGGGGTCCTCT
umc1655 3.04
ACGCAAGTACAAAATTACTGCGGA ATTAACGGCATGCTTGTAGCCTAA
umc1683 3.04
CGTCCGAAACTGTCTCTTCCTC GCCTCTTCTATGGAGAGACTGGAG
umc1717 3.04 AW573521
ACGACGAATTCACTAACACAACGA TTATCAGAGGAAGGGTTACGTTGG
umc1721 3.04 TC18514
CTGCTCCACCTTTCTGGTCC GTCATCTGGCCGACCTTCTC
umc1729 3.04 TC18473
GTCGTACCACACCAGCCACA TTCACTTCCACTTGTTGAACTTGC
umc1742 3.04 AW257824
GCTTCCATCCTACTGATGATGGTT AAGCTGATGCTTTGCCCTTG
umc1772 3.04 AW330577
ACATAATAACAAGCAGGCAGGAGG AAATAACGACTACGGTCACACGGT
umc1773 3.04 AW324744
GGATCACACTATCGAGTCAGCGAT CAAGGTAGCGTCGTCCTCCTC
umc1750 3.04- 3.05 AW499191
CCACAACTCGCTGCTGTCAATA AGGAGGCTGCTGACCCTTCTACT
umc1693 3.05 TC15396
CTTCGTCTTCCTCCACAAAACCTA TGGTGATGCAGTAGTCGAGGC
umc1730 3.05- 3.06 AW573320
GCGCTGCCAACTGTATCTTTATCT AAGTTACTCACGGTGCAGAGTTCC
umc1690 3.07 TC14774
ACCTTAGTTACACAGGCACACGGT GGTGATGGGATTTTCGCATTATTA
umc1767 3.07 AW330738
GTGGCATTTTTATCTGCAACACAG TGTAACTTAATCGTGGGCAGAACC
umc1682 4.01 TC12970
AGCAAGCAAGCAAGTCACTGAGTA GAGCTAGCCGGAGATAGAGAGGAG
umc1757 4.01 AW438120
TTTTCTGCAGGGATAACATTTGTG ATAGGAGGTGAGGTGAGGAGGAAG
umc1758 4.01 AW438120
CTTCCTCCTCACCTCACCTCCTAT GGTAGCCAATCCTTCCTTCCTATG
umc1759 4.01 AW438120
GTGAGGAGAGGAGACGGAGAGAG GAAGCTCCTGTGGAACGTGTG
umc1702 4.05
ACGAGGCTCTTCCGAGTTCC GTTTGAGGTGTTCACGGGTTCT
umc1791 4.05 AW499383
TCGTCAGTTTATTACTGCGACGAC ATTCAGAAGACGGCAAGCTGATAG
umc1775 4.07- 4.08 A85077
GAGGACAACGCTGCTATTCTCG GGAACTCCGTCAAAATCCCATC
umc1808 4.08
ATACACAGTGACAATGCGCCAC AGCGAGTCATCAACATCATCAGG
umc1740 4.09 AW461073
TACGGCTCAATTCCAGGAAAATAA ATTGTGCTTGCCTGCTAGAGTACC
umc1803 4.09
TGACCTCTCCCTCTAGGCCTCTAC CCCAATCTTCAGGTAATCCTCTCTC
umc1699 4.10 TC13032
CTTTTGCTCAAACACGGGAAATAC AGGCATTGAGCGATATGTTTGTTT
umc1720 4.10 AW520123
TATTGCCGATTAATCTGTCCCATT CAAGTTTGGGTACCTGAAGATTCG
umc1738 4.10 AW453330
CCAGACATTCCCCAAACCCTA CGTCGGTGTCGTACTGGTTG
umc1719 4.10- 4.11 AW600623
CCTGGAAGCACCACTGATACTAGC AGCTCCAGCCTGCCTACCAG
umc1649 4.11
GTGAAGCTCGATTTCTCCTCACAT CAGCGACACCATGATAAGTACACC
umc1707 4.11 AW600423
GTCGAGAAGCGATCGATCATAGTAG GCACGACAGGGAGTACGGTC
umc1679 5.01 AW258131
CACTGCTAAGCTGCTCCCTGTT TGCTAACTAACCCTGACCCTCTCA
umc1766 5.01 AW330795
ACAAGAAGGAATCGAGAGCAAATG CTTCGGGATGGAGTCGTAGTTC
umc1781 5.01 AW267325
CAAAAGGTGCAACTGTAATTGCCT ATGAGGCGAAGCCAAGAAAAAGT
umc1761 5.02- 5.03 AW355888
GGCTTGTAGTTGGAGTGGTCGTAG AGCAGCTTCAGAGGAGGAAGAAG
umc1686 5.03
GGTGAGGTCGTACCGGAAGAG GCAGCATCTTCTTTGTCGGC
umc1692 5.03 TC12816
AGAGACGAACTGAAGCCTGAAGTG GATGTCCACGTCCTGGTAGAAGTT
umc1705 5.03 TC15658
ATCTCACGTACGGTAATGCAGACA CATGACCTGATAAACCCTCCTCTC
umc1731 5.03 AW563115
TATTGACGATAATGTTCCCGCTTT GGTTATAGGATGACGAGACGGTTG
umc1784 5.03 AW519828
CCAAGGTCGTCATAGCCAACA CATGCACACGTTTGGTTTCTTAAC
umc1747 5.04 AW506691
ATCCGCTATCGAATGGCAGC GAAGAAGGAGATCGAGCGGCTA
umc1687 5.05
TGGGAAAGGTGAGAATATGTGTTTG GCTGACGACAAATATTCGAGAACAA
umc1722 5.05 AW600643
ATGCATGCCTTGATAATGGAGAAC ACTCTCTTCCTTCTCCGTGCTTTT
umc1800 5.05
TTATGGGTGCTGGTGATGTGTATC GAAAAGCAATCGCTTCTGAGAAAA
umc1752 5.06 AW461037
ATCCTCCTCCATATTCTATCGCGT GAAACAGAGCAGGAACCGGAG
umc1792 5.08 AW498199
CATGGGACAGCAAGAGACACAG ACCTTCATCACCTGCAACTACGAC
umc1753 6.01 AW461145
AAGATCTTGCTCCGTTTCCTCTCT TTCAGATGCAAATCTCTTTTCGCT
umc1723 6.02 AW574483
GAAAACTAATCAAACGCAACCAGG GATGGAGTGAGGATTAGCAGCCTA
umc1796 6.02- 6.03 AW562820
CGCTGAGGCTTAAGATGGTGTT AACGCCTTTACGAGCACGAAC
umc1795 6.04- 6.05 AW330572
CCCTCTCTTCCTAGGTTCATCGTT CAGCGGCGTCTTGAAGAGTAG
umc1751 6.05 AW498335
CCTCATAAAACCAGCAGATCCCT GCTTTTGTGTATACTGGTTTCGCC
umc1805 6.05
AGTGCACCAGCTTTTAATCACCTC TGTGACCTGTGTGGTCTGTGG
umc1762 6.06 AW352633
CTTACTCCAGGCACTCCATACCAT ATCCAGGTGAATGGTGTTTACGAT
umc1779 6.07 AW424482
AGGAGTACGGTCGGCACGTT GCTGCTGCTGGTTGTGATAGC
umc1695 7.00 TC12153
CAGGTAATAACGACGCAGCAGAA GTCCTAGGTTACATGCGTTGCTCT
umc1788 7.00 AW267378
CACTAATTGCTACCAGGAGATTCAAA AAGTCAGTGAAGCGCTGAGTTTTT
umc1787 7.02 AW282410
TGTAGTCCATGGAGCTCTTCTCCT CTTTTTCACACTCTGCACCTCCTC
umc1718 7.03 AW566142
TGAAGGACATACACCAATCCTCAA ACTAGTAAGGTGCATTTCCAACGC
umc1684 7.03- 7.04
GAGCTAGCTTTTTGCTTTGCTCAC AAGGGGCCCAGGTACTTGAC
umc1708 7.04 AW585300
GATATGTCGAGCTTCGCTGGAG CGCACACTAAAGCATCCTTAACCT
umc1710 7.04 AW563194
ACTTTGCAACTACCGTACATGGGT TTCGACTGCACGTGAAAATCTATC
umc1768 7.04 AW330690
ATTCCATTTCCCGGAGCCTACTA CAGAGCACACACTCACGAGTCAC
umc1782 7.04 AF233881
CGTCAACTACCTGGCGAAGAA TCGCATACCATGATCACTAGCTTC
umc1799 7.05- 7.06
GTGATGAATAATGTCCCCAATTCC GGACAGATGTCTGGAGATTGCTTT
umc1786 8.00 AW288952
ACCGTGACTTCCTCCTCATAACTG CATTTTTCGCATTTAGGAAATCCA
umc1790 8.02 AW257980
GAGAGGGAGGAGCAAGGAAATAGA GAGAAGAGTTCTCCATGGAACGAG
umc1778 8.02- 8.03 AW424513
GTGAACCATTGTAGCTGTCCCTG GAGCTCGTACCTGTTCATGAGGAT
umc1741 8.03- 8.04 AW424565
AGACGAACCCACCATCATCTTTC CGCTTGGCATCTCCATGTATATCT
umc1802 8.03- 8.05
TTCCTGACAAGAAAAATATAACAGTGG TTTCACAGTAGTGTCAGAAAGAGTTCA
umc1735 8.04 AW585263
GCGCACAATATAATGAACCAACAG TTTGCCAAAAAGACATGACACCTA
umc1712 8.05 AW585307
TACCTACCTTTTGATGCAGGTTGC CGGCACTAGTGAGTCTGATCAATG
umc1765 8.05 AW331078
AGATCGTGAGGACCATCAGCAG GAGAGATCCATCGTCAGTCGTAGC
umc1777 8.05 TC13887
GACAGCACCTGAAACTGAAACTGA GTCTTTCTCCACATCCCTGTTTGT
umc1728 8.05- 8.06 AW573317
AGTACTTTCAGGCAGGGACCTTCT AACGCACTTCTTGTAGCTGTAGGG
umc1724 8.06 AW520143
GTCTCAAGTGAAACAACCACGCTT CCACATGAGATGAGATTGCCATT
umc1764 9.02 AW331221
AATAAGCATGCTGCTACTGTCGTG ACGCATACACTTCCTTATTGGCAT
umc1688 9.03 TC12180
AGCAGTAGCCGCAAGCAGAG ATCTGGAGCTGCGTGCTGTC
umc1691 9.03 TC12180
TCGTCTAAACTGCATAAAAGGGGA ACGGAGATAGATGCACACAAACAC
umc1771 9.03- 9.04 AW330595
CATCAGGAAGGAAGACGACTAGGA GTGAAATGTTGTTTCCAATGCAAG
umc1732 9.05 AW562406
GAATTACCTGTTTGGAGCGGAAG GATTTTCTCTGTAGTTCGAGGCTGG
umc1794 9.05 AW330874
AGAGTAGATGCCGTGTAAGCAACC CGACCGGGGTAGTGTAGTGATAAG
umc1733 9.06 AF236080
ACACCCAACCTCCCACTGTAAAA GATTGGGATTGGGATTGGAAAT
umc1804 9.06- 9.07
GCGGCGAGGTTAAAGGAAAA GGTGTTTAGACACGCAGACACAAC
umc1785 10.03 AW400188
TTCAATCCGTAGGTCTGGTGCTAT CAATAATTTCTTTCGCCTTGTTCG
umc1645 10.07
CATCGTCATCAGTTCTTCCATGAG GTGATTGACAGAGGACCATCAGAA
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