Here are a couple that I like:
@InCollection{Swofford+Olsen:PhylogenyReconstruction,
author = "Swofford, David L. and Gary J. Olsen",
title = "Phylogeny Reconstruction",
booktitle = "Molecular Systematics",
publisher = "Sinauer",
year = "1990",
editor = "Hillis, David M. and Craig Moritz",
pages = "411--501",
address = "Sunderland, Massachusetts",
}
@Unpublished{Felsenstein:PHYLIP,
author = "Felsenstein, Joseph",
title = "PHYLIP (Phylogeny Inference Package) Version 3.4",
note = "Distributed by the author",
year = "1991",
month = "June"
}
@Article{Felsenstein:QRB,
author = "Joseph Felsenstein",
year = "1982",
title = "Numerical Methods for Inferring Evolutionary Trees",
journal = QRB,
volume = "57",
pages = "379--404"
}
@Article{Felsenstein:PhylogeniesFromMolSeq,
author = "Joseph Felsenstein",
title = "Phylogenies from Molecular Sequences: Inference and
Reliability",
journal = "Annual Review of Genetics",
year = "1988",
volume = "22",
pages = "521-565",
}