Tom,
I have a program that estimates the number of transitions and transversions
for each pair of aligned sequences, using Kimura's (1980) 2-parameter
method. The results are represented as a matrix with transitions above
and transversions below the diagonal. That is what you want?
If so, the progran is "matdisk2", it is written in almost plain C
and is reachable through anonymous ftp from
gsbs18.gs.uth.tmc.edu
directory
pub/zharkikh/bootstrap
files
matdisk2.c
reads.cc
read-set.cc
distance-K2.cc
Andrey
