IUBio

removing columns from phylip infiles

ard jonker a337ard at horus.sara.nl
Thu Nov 9 09:18:48 EST 1995


In article <47l8ns$441 at lyra.csx.cam.ac.uk>, Jeremy Packer
<jclp100 at mole.bio.cam.ac.uk> wrote:

> I often encounter the situation where I want to use only part of a 
> sequence alignment as a phylip infile. (for example to exclude all 
> postions where there is a gap in any of the sequences or where the 
> alignment appears uncertain). 
...
>We are mainly using Macs, but also have access to PCs 
> and UNIX( via telnet).

<ftp://ftp.funet.fi//pub/sci/molbio/iubiomolbio/readseq/mac-bin/readseq.hqx.gz>

(160 KB) will do the trick. Otherwise Alpha will, if you hold the option
key when you select columns in your text. Finally, SeqApp seems to do what
you want.



More information about the Mol-evol mailing list

Send comments to us at biosci-help [At] net.bio.net