I have a large (98 taxa, 200 bp) NEXUS file that I have tried to analyse
with PAUP. Needless to say, it is slow. I have PHYLIP for UNIX on a new
SPARC station and wish to try it that way - does anyone have a conversion
utility for converting NEXUS files to PHYLIP infiles? Also, what other
parsimony programs are available for UNIX systems? I know a UNIX version
of PAUP is forthcoming, but is there anything else I could try in the
meantime. Much thanks!