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Sliding window GC%

Peter Rice pmr at sanger.ac.uk
Wed Aug 14 03:56:33 EST 1996

In article <199608132247.PAA11103 at parker.bio.uci.edu> ayalalab at PARKER.BIO.UCI.EDU (ayalalab) writes:
>   Is there anybody knowing about any program to analyse the GC content by sliding a 
>   window along the sequence?.
>   Thank you.

If you have access to the GCG (Wisconsin) Sequence Analysis Package, you can
do this with the STATPLOT and WINDOW programs. Just look for "S" (G or C).

Peter Rice                           | Informatics Division,
E-mail: pmr at sanger.ac.uk             | The Sanger Centre,
Tel: (44) 1223 494967                | Wellcome Trust Genome Campus,
Fax: (44) 1223 494919                | Hinxton, Cambridge, CB10 1SA,
URL: http://www.sanger.ac.uk/~pmr/   | England

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