In article <Pine.SOL.3.91.960829123258.27488B-100000 at meded.med.uci.edu>, ggutman at MEDED.MED.UCI.EDU (George Gutman) writes:
>I'd like to be able to survey the non-coding regions of transcripts, for
>example listing the lengths of each from genes withing a particular
>database, or searching for genes with NCRs within a given range of
>lengths. Can anyone point me to tools to do this?
If you are interested in vertebrate NCRs, HOVERGEN is a database of
all vertebrate genes in which gene structure information is declared,
including introns and non coding flanking regions. It is easily
searchable with QUERY_WIN, a graphical interface for recovering
sequences in data bases structured under ACNUC.
You may check : http://biom3.univ-lyon1.fr:8080/www/doclogi/hoverangl/ahovergen.html
reference : Duret, Mouchiroud, Gouy (1994) NAR 22: 2360-2365
hope this helps,
Marc Robinson
_________________________________________________________________
UMR CNRS 5558 "Biometrie, Genetique, et Biologie des Populations"
Universite Claude Bernard Lyon 1
43, boulevard du 11 novembre 1918
69622 Villeurbanne cedex
France
tel : 72 44 80 00 - poste 41 43
fax : 78 89 27 19
e-mail : robinson at biomserv.univ-lyon1.fr
