In Article <kjd98h9bc7.fsf at alpha0.bioch.Virginia.EDU>,
wrp at alpha0.bioch.virginia.edu (William R. Pearson) wrote:
>In article <4dj2d1$1t2 at news.cis.okstate.edu> Ulrich Melcher
<umelcher at bmb-fs1.biochem.okstate.edu> writes:
>> Is there software that can:
> 1) Given an amino acid sequence alignment and the raw nucleotide
> sequences that translate to the amino acid sequences, produce a
> nucleotide sequence alignment that is equivalent to the amino acid
> sequence alignment; and/or
>
Just out of curiousity, is there some reason that doing it by hand
is a problem? I have aligned AA sequences, and then gone back
to align the DNA the same way, while a pain in the butt, I don't
think I would be comfortable trusting a program.
I would appreciate any thoughts on why programs to do this are better.
Cheers,
Sarah Tamara Braun
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