How about Puzzle 2.5, a maximum likelihood program for both nucleotides and
a.a.? Has anyboy tried the program?
+=====================================+
Q. Quentin Fang, Ph.D.
Department of Biology
Georgia Southern University
Landrum Box 8042
Statesboro, GA 30460-8042
Voice: (912) 681-5487/871-1586
Fax: (912) 681-0845
Internet: qfang at gsaix2.cc.GaSoU.edu
+=====================================+
On 19 Sep 1996, Joe Felsenstein wrote:
>> Two programs exist to do it. Ziheng Yang's PAML and Adachi and Hasegawa's
> MOLPHY package. You can find out where to get them (both are free and
> available over The Network) on the Other Phylogeny Programs page of my
> PHYLIP Web pages:
>>http://evolution.genetics.washington.edu/phylip/software.html>> --
> Joe Felsenstein joe at genetics.washington.edu (IP No. 128.95.12.41)
> Dept. of Genetics, Univ. of Washington, Box 357360, Seattle, WA 98195-7360 USA
>>
