Max Like for Amino Acid seqs

Q. Quentin Fang qfang at GSAIX2.CC.GASOU.EDU
Thu Sep 19 08:57:14 EST 1996

How about Puzzle 2.5, a maximum likelihood program for both nucleotides and 
a.a.?  Has anyboy tried the program?

  Q. Quentin Fang, Ph.D.
  Department of Biology
  Georgia Southern University
  Landrum Box 8042
  Statesboro, GA 30460-8042
  Voice: (912) 681-5487/871-1586
  Fax: (912) 681-0845
  Internet: qfang at gsaix2.cc.GaSoU.edu

On 19 Sep 1996, Joe Felsenstein wrote:

> Two programs exist to do it.  Ziheng Yang's PAML and Adachi and Hasegawa's
> MOLPHY package.  You can find out where to get them (both are free and
> available over The Network) on the Other Phylogeny Programs page of my

> PHYLIP Web pages:
> http://evolution.genetics.washington.edu/phylip/software.html
> -- 
> Joe Felsenstein         joe at genetics.washington.edu     (IP No.
>  Dept. of Genetics, Univ. of Washington, Box 357360, Seattle, WA 98195-7360 USA

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