Genetic Code for Mycoplasma
Brian Foley
btf at t10.lanl.gov
Wed Mar 5 19:58:20 EST 1997
Todd Charles Wood wrote:
>
> Does anyone have a reference for the Mycoplasma genetic code?
> Or just the code? Either one is fine.
>
> Thanks,
>
> Todd Wood
> tcw3r at virginia.edu
Here are the first and last segments of the complete genome:
The others have accession numbers and LOCUS names intermediate
between these.
LOCUS MPAE000063 1843 bp DNA BCT
18-NOV-1996
DEFINITION Mycoplasma pneumoniae from bases 815265 to 663 (section 63
of 63)
of the complete genome.
ACCESSION AE000063 U00089
NID g1674383
KEYWORDS .
SOURCE Mycoplasma pneumoniae.
ORGANISM Mycoplasma pneumoniae
Eubacteria; Firmicutes; Low G+C gram-positive bacteria;
Mycoplasmas
and walled relatives; Mycoplasmatales; Mycoplasmataceae;
Mycoplasma.
REFERENCE 1 (bases 1 to 1843)
AUTHORS Himmelreich,R., Hilbert,H., Plagens,H., Pirkl,E., Li,B.C.
and
Herrmann,R.
TITLE Complete sequence analysis of the genome of the bacterium
Mycoplasma pneumoniae
JOURNAL Nucleic Acids Res. 24 (22), 4420-4449 (1996)
MEDLINE 97105885
REFERENCE 2 (bases 1 to 1843)
AUTHORS Himmelreich,R., Hilbert,H. and Li,B.-C.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-1996) Zentrun fuer Molekulare Biologie
Heidelberg, University Heidelberg, 69120 Heidelberg, Germany
FEATURES Location/Qualifiers
source 1..1843
/organism="Mycoplasma pneumoniae"
/strain="M129"
/note="ATCC 29342"
CDS complement(171..1793)
/partial
/gene="nusA"
/note="E07_orf540o; N-utilization substance protein
A
homolog; similar to Swiss-Prot Accession Number
P32727,
from B. subtilis"
/codon_start=1
/db_xref="PID:g1674384"
/transl_table=4
/translation="MNNQSNHFTNPLLQLIKNVAETKNLAIDDVVLCLKTALAQTYKK
HLNYVNVEVNIDFNKGLMQIEQLFDVVDDNNEDYDDFLEMPLSEAKKLNPNLEVGGVL
RKPVSLKDIKGDLISKMVLLFNQKINETAFKTVMSDFINEVGQVIEARVEDIDTNKDG
GLKGYIVNLETTKGYMPKRELSKGEKLDIGKKYLFVIKEIQKQSSMWPITLSRSDSRL
LEFLLNSNTPEIANGTIEIKKMERSPGTKSKVAVISKDPVVDPIAAILGPKGERIRGI
SEEFNGEIIDIVIWNEDKLKFLVNAVLPAEVVGYNILQDDERDTSIEIVVPANQIANV
FGFKGINIRLISNLTGWSSVDVYTEKDAAEQGIEFTRVNFQPQGIFGIKKRRDKISNN
PRNNNQQLASDKVFYTSKANVVDDEIIVDLAKQAEAKRVKQIKQEATKPELQLQQELN
LEATPKVAAPTPTPAPQPTPAPTKVEPVPPPVSVTPKPIPKVNKPKPVVKPKSVFSIT
VEADDSKTKPEKSSAKTNTPQTKQTFDNFDDL"
BASE COUNT 466 a 391 c 396 g 590 t
ORIGIN
1 aaagcagcta cacttaaata atacccccga cctggtagtg tttgcgctaa
atccacccgt
61 agttgatgct ctaattttac aagacgcaaa agtagcggct tagcaaaaga
ctttctggta
121 actaaacatt ggcgccaact ttgcatagtg tgaaatggtt agattaacga
ctagagatcg
181 tcaaagttat caaaggtttg tttcgtttgt ggggtgttag ttttagcgct
tgacttttct
241 ggtttagtct tactgtcatc cgcttcaacc gtaatcgaaa agactgattt
tggtttaacc
301 actggcttgg gcttattgac cttggggatt ggcttaggtg taacgcttac
tggtggtggt
361 actggctcaa ctttagttgg tgcgggagtt ggttggggtg caggggttgg
ggttggagca
421 gctaccttag gggttgcttc gaggttaagt tcttgttgta attgcaactc
gggtttagtt
481 gcttcctgct tgatttgctt gacccgtttg gcttccgctt gctttgctag
atcgactatg
541 atctcatcat caaccacatt ggccttcgaa gtgtaaaaca ccttatcaga
tgcgagctgt
601 tggttgttgt tgcgtggatt gttggagatc ttgtcgcggc gctttttgat
gccaaaaata
661 ccttggggtt gaaagttgac ccgggtgaat tcaatccctt gttcagcagc
atctttttcg
721 gtgtaaacgt ccacactact ccaacccgtt aggttactaa ttaagcgaat
gttaattcct
781 ttaaaaccaa agacgttggc aatctggttg gcgggtacca cgatttcaat
gctggtatcg
841 cgctcatcgt cttgaaggat gttgtaaccg accacttcag ccggtaaaac
agcgttgacc
901 aagaacttta acttgtcctc atttcagatg acaatatcaa tgatctcacc
gttaaactct
961 tcactaatgc cgcgaatgcg ctcgcccttg ggacccaaaa tggccgcaat
cggatcaact
1021 actgggtctt tggaaatcac ggccacctta gacttggtac caggagagcg
ttccatcttt
1081 ttaatttcga tcgtaccgtt agcaatttcg ggagtgttgg aatttagcaa
gaattccagt
1141 aaacgcgaat cactcctgga aagcgtaatt ggtcacatcg aagattgctt
ttggatttcc
1201 ttaatcacaa agaggtactt cttgccaata tctagctttt cgcccttact
caactcacgt
1261 ttaggcatgt aacccttggt ggtttccaag ttaacaatgt aacccttcaa
tccaccatct
1321 ttgttcgtat caatgtcctc tactctagct tcaattacct gaccgacttc
attaatgaag
1381 tcactcatca ccgttttaaa agctgtttcg ttaatctttt ggttgaagag
taataccatt
1441 ttgctaatga gatcgccctt aatgtctttg agtgaaaccg gtttgcgcaa
caccccgcca
1501 acttctaggt tcggattgag cttcttagcc tcacttaaag gcatttccaa
aaagtcatca
1561 taatcctcat tgttatcatc tacaacatcg aagagctgtt caatttgcat
taagcccttg
1621 ttaaagtcaa tgttgacttc cacattgaca tagttcaaat gcttcttgta
tgtttgtgct
1681 aatgctgttt taagacacaa aacaacatca tcgatggcta aattcttggt
ctcggcaacg
1741 ttcttaatca gttgtaacaa aggattggta aagtgatttg attgattgtt
cataatgtga
1801 taaagtgggc aaataaaaaa gaagtgccta gcgacacttc tct
//
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LOCUS MPAE000001 9255 bp DNA BCT
18-NOV-1996
DEFINITION Mycoplasma pneumoniae from bases 664 to 9918 (section 1 of
63) of
the complete genome.
ACCESSION AE000001 U00089
NID g1673645
KEYWORDS .
SOURCE Mycoplasma pneumoniae.
ORGANISM Mycoplasma pneumoniae
Eubacteria; Firmicutes; Low G+C gram-positive bacteria;
Mycoplasmas
and walled relatives; Mycoplasmatales; Mycoplasmataceae;
Mycoplasma.
REFERENCE 1 (bases 1 to 9255)
AUTHORS Himmelreich,R., Hilbert,H., Plagens,H., Pirkl,E., Li,B.C.
and
Herrmann,R.
TITLE Complete sequence analysis of the genome of the bacterium
Mycoplasma pneumoniae
JOURNAL Nucleic Acids Res. 24 (22), 4420-4449 (1996)
MEDLINE 97105885
REFERENCE 2 (bases 1 to 9255)
AUTHORS Himmelreich,R., Hilbert,H. and Li,B.-C.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-1996) Zentrun fuer Molekulare Biologie
Heidelberg, University Heidelberg, 69120 Heidelberg, Germany
FEATURES Location/Qualifiers
source 1..9255
/organism="Mycoplasma pneumoniae"
/strain="M129"
/note="ATCC 29342"
CDS complement(77..3418)
/note="E07_orf1113; MG140 homolog, from M.
genitalium"
/codon_start=1
/db_xref="PID:g1673646"
/transl_table=4
/translation="MNDWQWLKNRLVNAKTKAVSFWLAQTTSTILDIAELIKCCSDLK
NTSINGLVDLINQQEKLEFNLTRLKEIDGEDARQLFGIEGNVYKHFQTELSRFYKQTR
KHFRETGSESLFLGLPVIEGINEFNDVFRAPLLYVGVKLKVAPRLERFWLEINREEIF
LNPTIIGVEINKRNSLFKNNYDTTKVDINQALEIFRELEYQFRMPLTSELKSFSKKAK
SDFNTEKRTNFLTNNVLLGIFDVKGDQLFQNFNEILNTDPDVLDELLKDRRDLLYDNR
EFRENFNLKGTYLFSHLDIFQQYAVKQAFDGDVIIEGPPGTGKSETIVNILVNLALNK
KKVLFVSEKVTALDVVYNRLGSFKHIALFNASVASEKKRFYSQFADYESFFTDNFSKK
DLVNEMPVFDGQWVDKILSEFTNLQNIYDTQINSGNQSYSFKEILSSFPILDVSYIKI
KEHDRFDEWVRVFSSQVWLEKHLTYLAFKAELSKRWQNIDNFYALKDLLEKRKNIRVL
CYVLDYFEQNNSIIKPKRVLLYTPTERGQKQLHQLQQDVAKYNSLQRFKSAAKFETIK
LNLANKLAQNAKPFFFSWFIQTHAQTLLENLVQTQKQLVKAKQSYLSKIEQYVVSCKR
ILKATILANFFELYQTNKNELLDICREAKNPVLKEITWWFKKNFALLSKLFPVHIMTF
ESAALLTPNQRRLYDYVVIDEASQVYLERAIPILYRGAKYIIAGDTKQLKPSNFFQAR
AEYDVDEEFEDGNVEAAVHSTSLLHFLKNRSRILTLLKFHYRSDSANLIAFTNNRIYN
NELIFMNKATADKQVFIVHDVIDGIWRNNRNLQEARDVVQRLEQLTQTAEYQKSLGVI
CFNKNQAELIEYMIDKQNNPLLNEWRDRVNAQGEYVGLFVKNIENVQGDERDIIIFSL
GYDRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNRASDYNGLSSNSLGSKLLVE
YLLYCEAMANNQGESLDFQATQKQAPKAKYELELENQFFNELELIFGEQFTIKRNVNE
GAYSFSFVFYFNENPYLAVDFNPALPHSRKEVSENIIYREQFLKKRKWNLVNIWLDEW
KLNPGGVLQKLRNCLTHSENEFEEI"
CDS complement(3594..5978)
/note="E07_orf794; putative lipoprotein, MG260
homolog,
from M. genitalium"
/codon_start=1
/db_xref="PID:g1673647"
/transl_table=4
/translation="MKFKYGAIVFSGLLGVSAILAACGARGKFNQVDDGKIKLASSLT
SRSASTALQKVVEKYNKVKGVNDYPIEITQIAGGYDGGRTDLQTRVNVKDTTNFYNLI
LNYPDLVSTLGRVGMELPFDKVKTDKLADRFLDFNNRISAISKKGIYGIPVSLSTEVL
SINGPVLHYILNSAQGKVSSVTSVQRTADSGSGTTNNNGVTKPLKIDKENESTKKLWE
EIENKAKENGKKTSSSRRKRNLSSSKQMSTQTQPTDNSNDANQSDQAIEKTWGKYQEV
EGGLKDYTFKASVFENWHDLLDFSNRVAKSFSNINTNTNKKGTDIQGVLGIDSTPNSL
FTSVFAAGGGNYDNFFYKVANGRADFSNFKNKGTSYQNLQKVYGDYKGLIDSNGLFVN
KGGSYSSNFQKFHQLAYSISSTSGFFYSFAGENSKRLKFDGGNFIEFPGFTQAIYAPE
NNSQSGGESGDQTTNNEANLLGTFKIKSSNKSKSSSSKSSTKAETGKTSGGDQNQGKK
GEGAQNQGKKGEGAQNQGKNGGVETTIYLYKNSIPSGKNKGENAILIDNKTIVEQLES
AAKKEDKKSGESTTEQTQIQSKSVTEQKQPKIIGYTTTGNVHEDNKHIFPIDKLTSDR
NFDRKIIVGATEETLDKSNTLQSNEAIVLPAPSKYKSTDTNKVTITQGPNIIGIHVNE
KENAETQKFVDWFLNSPQTWEGKGKGKEQTNKTAAEFFAESASYILPLKEIFEQKNEK
KEGSDQKDSKSNGRGKQTNLYTEKALELFRGISTDQIVSYSDQVTLGVVVSVME"
CDS complement(6261..6662)
/note="E07_orf133; E07_orf133 Protein"
/codon_start=1
/db_xref="PID:g1673648"
/transl_table=4
/translation="MEFNGNLNHMEKRKSGYVTQKQFNEYKDSNDQRLIKIETTLAAQ
GEQISQLVQIVFLQGKQIKELQAEQKAQRVEFNARMDRFESLVLKSLESIGNTLTDFG
KRFDSMETRLDSMDGRLDSMETRLDKIDPPK"
CDS complement(7145..7819)
/note="E07_orf224; hypothetical 130K protein
homolog;
similar to GenBank Accession Number JS0069, from M.
pneumoniae"
/codon_start=1
/db_xref="PID:g1673649"
/transl_table=4
/translation="MGSNAVPSLWYWVVDERTTSGRGTWWAHTELNWGTDKQKEFVEN
QLGFNETSATDSHNFKKALLHQPAYLISGLDVVADHLVFAAFRAGAVGYDMTTDTNAS
TYNQALTWSTTAGLDSAGGYKALVENTAGLNGPINGLFTLLDTFAYVTPVSGMKGGSK
NTEAVQTTYPVKSDQKASAKIASLINASPLNSYGDKKSHPPKVKGRQLQNIFDDWKLT
KAVSLM"
repeat_region complement(7233..7957)
/rpt_family="REPMP5"
CDS complement(7647..8951)
/note="E07_orf434; hypothetical 130K protein
homolog;
similar to GenBank Accession Number JS0069, from M.
pneumoniae"
/codon_start=1
/db_xref="PID:g1673650"
/transl_table=4
/translation="MAVGIFILSLNPSYELVDWKRVGDTKLVALVRSALVRVKFNDGT
SSDSNNQDTNQNALSFDTQESQKALNGSQSGSSDTSGSNSQDFASYILIFQAAPRATW
VFERKIKLELPYVKNESGAGDSTTTNSGSLYTTLQDLLVEQPVTPYTPNAGLARVNGA
AQDTVHFGSGQESSWNSQRSQKVLKNNPGPKAVTGFKLDKGRAYRKLNEAWPVYEPLD
STKDGKGKDESSWNSSEKTTAESDAPLVGSTGSQMAAVTDSQQSGDNNGLVSLAQRST
TVAVQKSDSSGSQGQGTTDNKFQKYLNTTQALHQMGVIVPSLETWAGENKYWNRYPCC
WWCFSPSSDPAIVFHKWRSTECNHPVIPYFNRPTRLLKWPDRCDGFERGTEFVVLGRG
WANHVRKGYLMSPHRVELGHRQAEGVCGESAWFQWNQRHRLA"
misc_feature complement(77..3418)
/note="E07_orf1113"
misc_feature complement(3594..5978)
/note="E07_orf794"
misc_feature complement(6261..6662)
/note="E07_orf133"
misc_feature complement(7145..7819)
/note="E07_orf224"
misc_feature complement(7647..8951)
/note="E07_orf434"
BASE COUNT 2483 a 1913 c 1828 g 3031 t
ORIGIN
1 aatgtgataa agtgggcaaa taaaaaagaa gtgcctagcg acacttctct
taaatgacga
61 gaaatatatc gtttaattat atttcttcaa actcattttc gctgtgagtt
agacaatttc
121 taagcttttg caacacacca cctggattga gttttcactc gtctaaccaa
atgttaacga
181 ggttccattt ccgctttttc aaaaattgtt cgcggtaaat aatgttttca
ctcacttcct
241 ttctggagtg gggtaaagca gggttaaagt caaccgctag gtaagggttt
tcgttaaagt
301 aaaagacaaa gctaaagctg tatgcaccct cattgacatt gcgtttaatc
gtaaactgct
361 caccaaaaat aagttccaac tcattaaaga actggttctc caattccaat
tcgtacttgg
421 ccttgggtgc ttgtttttgg gttgcttgga agtctaagct ctcaccctgg
ttgttggcca
481 ttgcctcaca gtacagtaag tattccacca ataacttact acccaaggaa
ttggagctca
541 aaccattgta atcactagca cggttagtct tgaacagttc aatccgctgc
ttagcacggg
601 taatcgctac attcaaacgg ttctccccac cttgcttgga aatcgggcca
tagctgttga
661 cagaacggtc atagcccaac gagaagataa taatgtcccg ttcatcaccc
tgaacgtttt
721 caatgttttt gacaaacaaa ccgacatact cgccctgagc gttcacccgg
tcacgtcact
781 cattgagtag cggattgttc tgcttgtcaa tcatgtactc aattaactcg
gcctgatttt
841 tattgaaaca gatcacccct aatgattttt gatattccgc agtttgggtc
aactgttcta
901 agcgttgtac gacatcgcgt gcttcttgaa ggttacggtt gttccgtcaa
ataccatcga
961 tgacatcatg gacaataaag acctgcttgt cagcggttgc tttattcata
aagatgagct
1021 cgttgttata aatgcggtta ttagtaaagg caattaggtt agcggaatca
ctgcggtagt
1081 ggaatttgag cagcgttaaa atgcgcgaac ggttcttcaa aaagtgtagt
aacgaagtcg
1141 agtgcaccgc agcttcaacg ttaccatctt caaactcttc atccacatca
tactcagccc
1201 gggcttggaa gaaattggat ggttttaatt gtttggtgtc tccagcaata
atgtacttag
1261 cgccacggta taagattgga atggcacgtt ctagataaac ctggctagct
tcatcaatca
1321 ccacatagtc atacaaacgg cgctggttcg gggttaataa ggcggctgat
tcaaacgtca
1381 taatgtggac ggggaatagc tttgataaca gtgcaaagtt cttcttaaac
caccaggtaa
1441 tttcctttaa aacagggttt ttggcttccc gacagatatc caatagttca
ttcttattgg
1501 tttggtacaa ctcaaagaag ttggctaaaa tggtagcttt gagaatccgt
ttacaactaa
1561 ctacatactg ctcaattttg cttaagtagc tttgcttagc cttaaccaat
tgcttttggg
1621 tttgtacgag attttccaac agtgtttgcg cgtgtgtttg aatgaatcaa
gaaaagaaaa
1681 aaggcttggc gttttgtgct agtttgttag ctaaattgag cttaattgtt
tcaaacttag
1741 cagccgattt aaaacgttgc aagctgttgt acttagcaac gtcttgctgg
agttggtgca
1801 actgcttttg cccgcgttca gtgggggtat agagcaatac ccgcttcggt
ttgattatgc
1861 tgttgttctg ctcgaagtaa tccaacacat agcacaacac gcggatgttc
tttctttttt
1921 ccagtaagtc ttttaaagcg tagaagttat cgatgttttg tcagcgtttg
ctcagttccg
1981 ctttaaacgc taagtaagtt aagtgttttt ctaatcaaac ttgtgaggaa
aatacccgca
2041 ctcattcatc aaaacgatcg tgttccttga tcttaatgta actgacatca
agtattggaa
2101 aactacttag gatttccttg aaggaatagc tctggttacc cgaattaatt
tgggtatcgt
2161 aaatgttttg aaggttagtg aattcactta ggatcttatc aacccactgc
ccgtcaaaca
2221 ccggcatttc gttaactaaa tccttcttgg aaaagttatc ggtaaagaag
ctttcataat
2281 cagcgaactg gctgtaaaag cgcttcttct cactcgctac cgaagcatta
aataaggcaa
2341 tgtgcttaaa gctacctagc cggttgtaaa cgacatctaa ggcagttacc
ttttctgaca
2401 caaacaacac cttctttttg tttaaagcga ggttgaccaa gatgttgaca
atcgtttcac
2461 tcttaccagt accaggtgga ccttcaataa tgacatcccc atcaaatgcc
tgtttgacag
2521 cgtactgctg gaagatgtct aagtggctaa agaggtaagt gccctttaag
ttaaagtttt
2581 cacgaaactc acggttgtcg tataagagat cgcggcgatc ctttaacaat
tcatccaaaa
2641 catcaggatc agtgtttaga atttcgttaa agttttggaa cagttgatcc
cccttaacgt
2701 caaagattcc taaaagaacg ttattagtga ggaagttagt ccgtttttca
gtgttaaagt
2761 cactcttagc ctttttggaa aaacttttta actccgaggt gagtggcatc
cgaaattggt
2821 attccaactc acgaaagatt tccaatgcct ggttaatatc aaccttagtg
gtgtcatagt
2881 tatttttaaa caagctgtta cgcttgttaa tttcaacccc gatgatggtc
ggatttaaaa
2941 agatttcctc gcggtttatt tccaatcaaa agcgttcaag tcgtggtgct
acttttaact
3001 taacccccac atagagtaaa ggagcacgaa agacatcgtt aaactcgtta
atgccctcaa
3061 ttactggtaa acctaaaaag agactttccg aaccagtttc gcgaaagtgt
ttgcgcgttt
3121 gcttgtaaaa gcgactaagt tcagtttgga agtgtttgta aacattacct
tcaatgccaa
3181 acaactgtcg tgcatcctcg ccatcaattt cctttaacct tgttaagtta
aattcgagtt
3241 tttcttgttg gtttataaga tcaactaacc cattaatgga agtattcttt
aaatccgaac
3301 aacatttaat tagttcagca atatctaaga tggtgctggt agtttgggct
agccagaaac
3361 taacagcctt agttttggcg ttaaccagcc ggtttttgag tcactgtcag
tcgttcatgg
3421 agtcgtctaa attgctttaa agcattattt gattataaag cgctagcttt
atgaaaccct
3481 tgactggact gcaaaagtga ttagctaaat atcactacct aaagttgcaa
taaagttttg
3541 aacaaacttt tcaaaagatg ctttagagct tactgctgcg ttaaaagtgg
cacctattcc
3601 atcacggaaa cgaccactcc taaagtcact tggtcactgt aacttactat
ttgatcggta
3661 ctaatacctc taaatagttc caaggccttt tcggtgtaga ggttagtttg
tttacctcta
3721 ccattgcttt tactatcttt ttgatcgctg ccttctttct tttcattctt
ttgctcaaaa
3781 atttccttga gtggcaagat ataagaagcc gattcagcaa agaattcagc
tgcggtttta
3841 ttagtttgtt ctttaccttt tcccttaccc tctcaagttt gcggactgtt
taagaatcaa
3901 tccacaaact tttgtgtttc tgcattttcc ttttcgttga cgtgaattcc
aatgatattc
3961 ggaccttggg tgatggttac tttgttagtg tcagtacttt tgtacttaga
gggtgctggt
4021 aaaacaatgg cttcattgga ctgcaaagta ttcgatttat cgagtgtttc
ttcagtggca
4081 ccaacaataa ttttgcggtc aaaatttcga tcagatgtaa gtttgtcaat
tgggaaaatg
4141 tgtttgttgt cttcgtgaac attgccagtg gtagtgtaac cgatgatttt
gggttgtttt
4201 tgttctgtta cacttttact ttgtatttgt gtctgttctg tggtagattc
gccactcttc
4261 ttatcttctt ttttagccgc actttctagt tgttccacaa tagttttgtt
atctataaga
4321 attgcatttt cgcctttatt ttttccagat ggaattgagt ttttataaag
gtaaatagtt
4381 gtttctacac ctccgttttt gccttgattt tgagcgcctt cgcctttttt
gccttgattt
4441 tgagcgcctt cgcctttttt gccttggttt tggtctccac cactagtttt
gcctgtttcg
4501 gctttagtgc ttgatttgga acttgaagat ttagatttat tagagctttt
tattttgaaa
4561 gtgcctaaaa gattggcttc attatttgtg gtttgatcgc cactctctcc
accactttga
4621 ctattatttt caggcgcata aattgcttga gtaaatccag gaaactcaat
aaaattaccg
4681 ccatcaaact tcaagcgctt tgagttttca ccagcaaacg agtagaagaa
gccggaagtc
4741 gaggaaatac tgtaagctaa ttggtgaaac ttttggaagt tcgatgaata
agaaccaccc
4801 ttattgacaa agagaccatt gctgtcaatc aagcctttgt aatcaccata
aactttttgt
4861 aagttttggt aagaagtgcc tttattctta aagttactaa agtcagcccg
accgtttgca
4921 accttataaa agaagttgtc atagttaccg ccacctgcag caaaaacaga
ggtaaataag
4981 gagttaggag tgctatcgat tcccagaaca ccttgaatat cggtgccctt
tttattggtg
5041 ttagtgttta tattgctaaa tgacttagct accctattag aaaagtcaag
caaatcgtgt
5101 cagttttcaa acacactggc tttgaaggtg taatctttta aaccaccttc
aacctcctga
5161 tatttacccc aagtcttttc tatcgcctgg tcgctttgat tagcatcgtt
actattgtca
5221 gtaggttgag tttgagtgct catttgttta gaactactta aatttctttt
tcttcttgaa
5281 gaactcgttt tcttaccgtt ttcttttgcc ttgttttcta tttcttctca
aagtttcttt
5341 gtagattcat tttctttatc aatcttcaaa ggttttgtta ctccattatt
atttgttgtt
5401 ccactaccag aatctgctgt tctttgcacc gaagtgacag aactaacctt
tccttgtgca
5461 ctattcaaaa tatagtgcaa aacgggtcca ttaatcgata aaacttcggt
ggataaagaa
5521 accggaatgc cataaatgcc ctttttggaa atggcactaa tacggttgtt
gaaatccaaa
5581 aaacggtcag ctaacttatc agttttaacc ttatcaaaag gtagttccat
cccaacacgt
5641 cccaaagtgg aaactaagtc gggatagttc aagatgaggt tataaaaatt
agtcgtgtct
5701 ttaacgttaa ctcgggtttg tagatcagtc cgcccgccat cataaccgcc
agcaatttgg
5761 gtaatttcaa tggggtaatc atttacgcct ttaaccttgt tatacttttc
aacaactttt
5821 tgtaaagctg ttgacgcact tctggaagtt aaagatgaag ctagcttaat
cttgccatca
5881 tcaacttggt taaatttgcc ccttgcccca caggcagcta aaatggccga
aacgcccaaa
5941 agaccactaa aaacaatagc gccgtactta aatttcataa acactagaaa
cccgaaattt
6001 agagaaatat taacaaagtt tgtagatgtt taacccttga aatttactag
tttgagttac
6061 tgaagtaaaa gtatttttaa aagcaaattt tgactgtttt taattaatta
aaagttgaat
6121 gtttaaatgg ttctactcag tgtgttatta tttttttttg aaattacttt
taaaaccaat
6181 tttggtcgtt aaatcgtttt agcttttttg tgaataaaaa taccaaaaac
agtttagctg
6241 ctggtatttt tagcttaaaa ctatttaggt ggatcgattt tgtctaaacg
agtttccatt
6301 gaatcgagac gaccatccat agagtccaaa cgagtttcca ttgaatcgaa
tcgtttacca
6361 aaatcagtca aagtgtttcc gattgattcc agactcttaa gcacaaggct
ttcaaagcga
6421 tccatgcgcg cgttaaattc aactctttgt gctttttgct ccgcttgaag
ttctttaatt
6481 tgttttcctt ggaggaacac aatttgaact agctgactaa tttgctcacc
ttgggcagcc
6541 aaagtagttt caatctttat gagccgttgg tcgtttgagt ctttatattc
gttaaactgc
6601 ttttgggtaa cataaccact ttttcgtttt tccatatggt ttaaattgcc
attaaattcc
6661 atgtcgtagc taccatcagg taactcttct tcccaaacat gacaattatt
aatcttatct
6721 ttgttgagtc ttttcttaaa caaagtaagt gaaattgtgc gtttaatggt
gaagacctcc
6781 tttattattg attggaaaaa cgtaaaaatg tttaaggagg tggttcgtca
ctggtcactg
6841 aacgagtttg aaacctaatt ggaagttgtt aatttttaat ttaaacatta
tgagtcttta
6901 cactaactaa attgcttaaa gttagtaaag acaccaaaat aacttcaaaa
cttttttgaa
6961 agtaaaagtt cctattaata gttagaaggg attacaaacc caaattgcaa
aatattcaaa
7021 ctttttgact actttgaaaa tctttctcaa tttatttagt gggagcaggc
agagtgactt
7081 gtgttgaaaa aacgagcctg ctcccgctga tttaaataaa tttagtaaat
tcatagtttt
7141 gcctctacat caaactaaca gcttttgtta gttttcaatc gtcaaaaata
ttttggagct
7201 gtctgccttt caccttaggt ggatggcttt ttttatcccc ataactgttg
agtggactgg
7261 cattaattaa ggacgcaatt ttggcggaag ccttttggtc ggacttgacc
ggataagtcg
7321 tttgcactgc ctccgtattc ttactccccc ctttcatccc actcaccggg
gtcacatacg
7381 caaaggtgtc gagcagggta aacaagccgt taatcgggcc gttgagcccg
gccgtgtttt
7441 ccaccaaggc cttgtacccc ccagcactgt ccaacccggc cgtggtcgac
caggtgagcg
7501 cttggttgta ggtcgaagcg ttcgtatcag tcgtcatatc ataccccacc
gcgccggctc
7561 gaaaggccgc aaagacgagg tggtcggcca caacgtcaag gccactgatg
aggtaggcgg
7621 gttgatgtaa cagcgctttt ttaaagttat gcgagtcggt ggcgctggtt
tcattgaaac
7681 caagctgatt ctccacaaac tccttctgct tgtcggtgcc ccagttcaac
tcggtgtggg
7741 ctcatcaagt accccttccg gacgtggttc gctcatccac gacccaatac
cacaaactcg
7801 gtaccgcgtt cgaacccatc acaacgatct ggccatttaa gtaagcgagt
tgggcggttg
7861 aagtatggta taactgggtg attacattcg gtagatcttc atttgtggaa
gacgattgcc
7921 gggtcgctgc ttggactgaa acaccaccag cagcacgggt agcgattcca
gtacttgttt
7981 tcccccgccc acgtttccaa agatggcact atcaccccca tctggtgcag
ggcctgggtg
8041 gtgttgaggt atttttggaa tttgttatcg gttgtgcctt ggccttgaga
accagaagag
8101 tcactttttt ggacagcaac agtagtggag cgctgggcaa gcgataccaa
tccattgtta
8161 tcacctgatt gctgactgtc tgtgactgca gccatttgac tcccggttga
tcccaccaac
8221 ggggcatcac tttccgccgt tgttttttcc gaactgttcc aagagctctc
atccttcccc
8281 ttgccatcct tggtcgaatc caggggttca tacaccggtc aagcttcatt
tagcttccgg
8341 tacgcgcggc ccttatcgag cttaaagccg gtgacggctt tgggtccggg
gttgttttta
8401 aggacttttt gggaacgttg ggaattccaa ctcgattctt gacccgaacc
aaaatgaacc
8461 gtatcctgag cagccccatt cacccgggct aaccccgcat tgggcgtgta
aggggtcacg
8521 ggttgttcga cgaggaggtc ttggagggtg gtgtagaggg agccactgtt
agttgtggtg
8581 gagtcccctg ctcccgattc gtttttaacg tagggcaact ctaacttaat
cttccgttca
8641 aacacccacg tggccctggg cgcggcttgg aagatgagga tgtagctggc
gaagtcttgg
8701 gagttagacc cggaagtgtc agaagatcca ctctgcgagc cattaagtgc
cttctgtgat
8761 tcttgggtat caaaactcaa ggcattttga ttcgtatctt ggttattaga
atccgaactc
8821 gtcccatcat taaacttcac cctgaccaac gctgagcgga ccagcgccac
caacttggta
8881 tcacccaccc gctttcagtc cacgagttcg tatgaggggt ttagtgaaag
aataaaaata
8941 ccaacagcca tgcattaact gctggtattt tatactgcta gctttttctc
tgctctttta
9001 agaattcaat aaactgattt aaaaacaatt caagctctaa agacatttta
tctggcttcc
9061 tttgagtgtt tgaatctttg tctttaatgt tcatcgttac ataaatttca
ttaactccat
9121 cagcagtgta tttattactt aataaataag ataaaatttc agaatcactt
aatacttcta
9181 tcattctttc aacagaagct ttctctgtaa cctttacttt tttaatggtc
aaatcctcct
9241 ttcttttgat ttttt
//
--
____________________________________________________________________
|Brian T. Foley btf at t10.lanl.gov |
|HIV Database (505) 665-1970 |
|Los Alamos National Lab http://hiv-web.lanl.gov/index.html |
|Los Alamos, NM 87544 U.S.A. http://retro.lanl.gov/~btf/home.html |
|____________________________________________________________________|
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