In article <6135m4$mk5 at net.bio.net>,
Gustavo Parisi <gustavo at unq.edu.ar> wrote:
>I would be very grateful if anybody knows the existence of any program
>to perform protein evolution simulations starting from a given protein
>sequence.
One program to try would be PSeq-Gen by Nick Grassly and Andrew Rambaut.
It is available from the web site:
http://evolve.zoo.ox.ac.uk/PSeq-Gen/PSeq-Gen.html
It can handle protein sequence evolution on a given tree, with site-to-site
variation included.
Other simulation programs will be found listed at my phylogeny programs
web site:
http://evolution.genetics.washington.edu/phylip/software.html
--
Joe Felsenstein joe at genetics.washington.edu
Dept. of Genetics, Univ. of Washington, Box 357360, Seattle, WA 98195-7360 USA
