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Changing to Nexus Format

Fernando Gonzalez Candelas fernando.gonzalez at uv.es
Thu Dec 3 11:13:08 EST 1998

Richard Friedman wrote:

> Everybody,
>         Does anyone have a program to convert an alignment in *msf,
> Clustal, Molphy, or Phylip format and the corresponding tree
> in Newick format into Nexus format? It turns out that the
> GCG Program Paupdisplay can root a tree using the mean of the longest
> Path method, but requires that the input file be in Nexus format.

You can use ForCon, developed by Jeroen Raes and Yves Van de Peer and
available at

This is a very useful program for format exchange under Windows.


Dr. Fernando Gonzalez Candelas                       Phone: (+34) 963 864
Dept. de Genetica / Servei de Bioinformatica        FAX   : (+34) 963 983
Universitat de Valencia
Dr. Moliner, 50                        e-mail1: Fernando.Gonzalez at uv.es
Burjassot, Valencia                   e-mail2:
gonzalez at evalgb.geneti.uv.es
E-46100 SPAIN

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