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molphy and blosum 62

David R. Bell david.bell at nottingham.ac.uk
Wed Jun 3 10:15:40 EST 1998

I am wondering if anyone can advise me.

I am trying to use Molphy- protml- for ML analysis of proteins, but I wish to
use Blosum62 instead of JTT. 

Does anyone know how to format the matrix and use it to score the protml
program ?
many thanks
david r bell

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