Andrew Rambaut wrote:
>>> I guess by PAUP tree you mean parsimony tree. PAUP (4) can do NJ and ML
> trees which are suitable for calibration. Of course if he has a
> hypothesis to test he will need some measure of error which PAUP can't
Thanks for the information. Since PAUP means "phylogenetic analysis
using parsimony" I've always equated it with parsimony, but that is obviously
an ambiguous usage now.