Andrew Rambaut wrote:
>>> I guess by PAUP tree you mean parsimony tree. PAUP (4) can do NJ and ML
> trees which are suitable for calibration. Of course if he has a
> hypothesis to test he will need some measure of error which PAUP can't
> do.
>> Andrew
Thanks for the information. Since PAUP means "phylogenetic analysis
using parsimony" I've always equated it with parsimony, but that is obviously
an ambiguous usage now.
Mike Syvanen
