In article <DJK4In.ELC at zoo.toronto.edu>, mes at zoo.toronto.edu (Mark
Siddall) wrote: [much interesting and useful material here and in related
> However because MALIGN is so thorough it takes a lot of memory and
> processor time.
> So you have a choice... get your alignment quick or be rigorous in your
I find it interesting that there is no discussion here of using homology
(such as secondary structure) to align sequences. Karl Kjer has been
working on this aspect of alignment.