James McInerney wrote:
>> One of the programs in the molphy package calculates amino acid distance matrices.
> There is a reference ot it on Joe Felsenstein's webpage:
Thanks. I have MOLPHY. However, the program PROTST.EXE does not estimate
distances but plain aa composition. I would like to estimate distances
based on the aa compositions of the different proteins.
> I can send you a macintosh version of my program GCUA that will do this,
> although it needs fasta-formatted protein-coding DNA sequences as input
> (it converts to proteins and then calculates a distance matrix).
Unfortunately, I don't have a Mac. UNIX or DOS are always welcome.