[Molecular-evolution] PGEToolbox: a Matlab toolbox for Population Genetics & Evolution

jamescai via mol-evol%40net.bio.net (by jamesjjcai from gmail.com)
Thu Jun 21 18:56:05 EST 2007


Dear All,

PGEToolbox is a Matlab-based program for analysis of polymorphism and
divergence data in population genetics and evolution. It computes
basic statistics of DNA sequence variation and carries out neutrality
tests, such as Tajima's D test, Fu & Li's tests and Fay & Wu's H test.
The significance of tests is determined from the distribution of the
statistics obtained by coalescent simulation. The toolbox performs
McDonald-Kreitman test (and several extensions), and also contains
functions for handling SNP genotype and haplotype data. The latest
version of the program can be obtained from:

http://bioinformatics.org/pgetoolbox/

All the best,

James



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