We want to regularily search sequence databases for proteins which are homologous to a given target.
Thus, we are searching for a (commercial or academic) tool which allows us to
- run a BLAST search in the current version of various protein sequence databases (SwissProt, nr,PIR,...)
- mark all hits which are not yet found previously
So it should
- compare the results of a BLAST search with a database
- create and change a database of protein sequence entries
I would be glad if you could point me to such a program.
Thank you for your help,
Institute of Technical Biochemistry
University of Stuttgart Email:jpleiss at tebio1.biologie.uni-stuttgart.de
Allmandring 31 Phone:(+49)-711-685-3191
D-70569 Stuttgart, Germany Fax: (+49)-711-685-3196
W3 home page: http://www.itb.uni-stuttgart.de:8080/