[Staden] gap4 does not run
Paul Donohue
staden at topquark.net
Wed Apr 26 10:22:55 EST 2006
http://www.bio.net/bionet/mm/staden/2006-January/001358.html
On Wed, Apr 26, 2006 at 12:10:29AM +0000, Damien wrote:
>
> I downloaded the Staden package and tried to use it. Unfortunately, the
> program gap4 refuses to start (while othe programs like trev of pregap4
> run fine).
>
> When I try to start gap4, I get the following message:
>
> invalid command name "load_alignment_matrix"
> while executing
> "load_alignment_matrix [keylget gap_defs ALIGNMENT.MATRIX_FILE]"
> (file "/home/damien/BIN/staden-linux-1-6-0/lib/gap/gap.tcl" line 683)
>
> I would appreciate if someone could tell me what to do. My OS is Kubuntu
> Linux (Debian based).
>
> Damien
>
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