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molscript and side chains

Thomas J. Stout stout at socrates.ucsf.edu
Thu Aug 29 13:32:12 EST 1996


You could include the Calpha atom.  It looks a little odd,
but not as odd as those floating side chains...

This is how I do it:

ball-and-stick require in residue A85 and not either atom O, atom N or atom C;

-Tom
 
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Evans_P (pre at mrc-lmb.cam.ac.uk) wrote:
: Steven Brenner wrote:
: > 
: > 3lcid at qucdn.queensu.ca (Carl) writes:
: > >Does anyone know how to get side chains to connect with a ribbon
: > >trace when using molscript?
: > 
: > Alas, there is no way to do this.
: > 

: Use the "turn" command rather than "coil". This goes through the CA
: positions. No cure for helix or strand though.

: 	Phil

: --------------------------------------------------------------------------
: Smail:  Phil Evans
:         MRC Laboratory of Molecular Biology, Hills Road,
:         Cambridge, CB2 2QH, UK
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Thomas J. Stout, Ph.D.                               stout at msg.ucsf.edu
Box 0448 Department of Biochemistry                  stout at neptune.ucsf.edu
School of Medicine                                   stout at brok.ucsf.edu
University of California, San Francisco              (415) 476-3937
San Francisco, CA 94143-0448                         (415) 476-1902 FAX
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